BAC Information

Click to search

BAC

Clone NameMSMg01-453H19
Chromosome7 (Build37)
Map Location 26,726,410 - 26,727,122
singlet/doubletsinglet
Overlap genenone
Upstream geneRabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10
Downstream geneLOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453H19.T7 (MSMg01no453_h19.b1)MSMg01-453H19.TJ (MSMg01no453_h19.g1)
ACCAG540487AG540488
length773776
length of high quality
(start - end)		717 (45 - 761)664 (76 - 739)
definitionCHROMAT_FILE: MSMg01no453_h19.b1 PHD_FILE: MSMg01no453_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:22 2005CHROMAT_FILE: MSMg01no453_h19.g1 PHD_FILE: MSMg01no453_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCCTTATATGAAGTCGTGGCTGCCCATAACAAACACTGTGAAGCT
CAGGGTTATATGCACCTTTCTATTACTGACCCCACCTTGCTTTCTTGGGT
AAAAGGATGATCTCAGTGATGAGGACAAGGACACCTCGGCTCCAGCCTGT
CCCCAGCTGTCAGGCTCCAAGCAGTCATCTAGCATTGCTGTCCCAGGTCC
GTCACTCAAAAGCCCTTCTGCTGTTGCACCATTAACAGTACTCCCAGCTT
ACCCCTGGCATGATCTTGGGTTACTTTGCCTTTCAGCTGGCGCTCCTATG
ATGCCTATCCCTCATGCCGGATTGGCTCTCCCCAACAGGCTTCATCTTCC
TCAGGTATATCATGAGGCTCTGTCAAACTTGGCCTTGATACAGAAGAGAC
TGGACCCTGGATTCTCTCTCCTCTGGCAGACTTGGCACTAATCTGAAAAT
CTGTCAATGCTTCTGGCCAAGATTCTCCATATTTTGAACAAGTACTGAAG
TAATGGGCCACACATCTGCAGACCTATTACAATTCATATAATCTCCTTAA
GGCAGTGTTCGACCCCACCTTGTTTCTTATTTGGGGTCAGAATATCATGA
CTTGTCTGAGAATCAGGCTAGAGTTAACCTGGAGTACAAACTTAATGTTA
CTCTTGACATGCTTACTGGTCATGGGGCATACATTAACCCTGTCACTCTG
GCCTCTATTAGATTGCATGCTTA

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCAACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGATGACAGTAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAAGAATGGATGCAGAAAAT
GTGGTACATCTACACACTGGAGTACTACTCAGCTATTAAAAAGAATGAGT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCC
TAAACACATGAAATTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGC
CCCTCCTTAGAATTGGGACAAAACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_h19.b1 MSMg01no453_h19.b1 CHROMAT_FILE:
MSMg01no453_h19.b1 PHD_FILE: MSMg01no453_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:22 2005
         (717 letters)



>mm_chr7_26726206_26727322
          Length = 1117

 Score = 1301 bits (673), Expect = 0.0
 Identities = 703/713 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttccttatatgaagtcgtggctgcccataacaaacactgtgaagctcagggtta 64
           ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcttccttagaggaagtcgtggctgcccataacaaacactgtgaagctcagggtaa 264

                                                                       
Query: 65  tatgcacctttctattactgaccccaccttgctttcttgggtaaaaggatgatctcagtg 124
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 tatgcacctttctattactgaccccgccttgctttcttgggtaaaaggatgatctcagtg 324

                                                                       
Query: 125 atgaggacaaggacacctcggctccagcctgtccccagctgtcaggctccaagcagtcat 184
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgaggacaaggacacctctgctccagcctgtccccagctgtcaggctccaagcagtcat 384

                                                                       
Query: 185 ctagcattgctgtcccaggtccgtcactcaaaagcccttctgctgttgcaccattaacag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctagcattgctgtcccaggtccgtcactcaaaagcccttctgctgttgcaccattaacag 444

                                                                       
Query: 245 tactcccagcttacccctggcatgatcttgggttactttgcctttcagctggcgctccta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tactcccagcttacccctggcatgatcttgggttactttgcctttcagctggcgctccta 504

                                                                       
Query: 305 tgatgcctatccctcatgccggattggctctccccaacaggcttcatcttcctcaggtat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgatgcctatccctcatgccggattggctctccccaacaggcttcatcttcctcaggtat 564

                                                                       
Query: 365 atcatgaggctctgtcaaacttggccttgatacagaagagactggaccctggattctctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atcatgaggctctgtcaaacttggccttgatacagaagagactggaccctggattctctc 624

                                                                       
Query: 425 tcctctggcagacttggcactaatctgaaaatctgtcaatgcttctggccaagattctcc 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 625 tcctctggcagacttggcactaatctgaaaatctgtcaatgcttctggccaagactctcc 684

                                                                       
Query: 485 atattttgaacaagtactgaagtaatgggccacacatctgcagacctattacaattcata 544
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atattttgaacaagtactaaagtaatgggccacacatctgcagacctattacaattcata 744

                                                                       
Query: 545 taatctccttaaggcagtgttcgaccccaccttgtttcttatttggggtcagaatatcat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 745 taatctccttaaggcagtgttcgaccccaccttgtttcttatttggggtaagaatatcat 804

                                                                       
Query: 605 gacttgtctgagaatcaggctagagttaacctggagtacaaacttaatgttactcttgac 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gacttgtctgagaatcaggctagagttaacctggagtacaaacttaatgttactcttgac 864

                                                                
Query: 665 atgcttactggtcatggggcatacattaaccctgtcactctggcctctattag 717
           ||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 865 atgcttactggtcatggggcatacattaaccctgtcactcccgcctctattag 917


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1117
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1107
Effective search space:   782649
Effective search space used:   782649
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |