Query= MSMg01no453_l03.b1 MSMg01no453_l03.b1 CHROMAT_FILE:
MSMg01no453_l03.b1 PHD_FILE: MSMg01no453_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:39 2005
(702 letters)
>mm_chr7_56180874_56181975
Length = 1102
Score = 886 bits (458), Expect = 0.0
Identities = 482/490 (98%)
Strand = Plus / Minus
Query: 5 gaattcctcctctggaatccagcaggcaaataaagaccaggagacgctatggccaaaaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gaattcctcctctggaatccagcaggcaaataaagaccaggagacgctatggccaaaaaa 431
Query: 65 catgtaatgtatatgtttttaacatcagaaagacagaaacctaacctcggtcagttcagc 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 catgtaatgtatctgtttttaacatcagaaagacagaaacctaacctcggtcagttcagc 371
Query: 125 aagattttattgaatctggtatatcttcactcttcttctgtgtggtatttgttctattta 184
||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 370 aagattttattgaatctcgtatatcatcactcttcttctgtgtggcatttgttctattta 311
Query: 185 atctgctagcgagtactcaggcaggcagataggactctgttttcaattatcactgtcctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atctgctagcgagtactcaggcaggcagataggactctgttttcaattatcactgtcctg 251
Query: 245 ttgctcaattatcctgcctgtggatatatccacaaatatcacgcactcaagtgaacctgg 304
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 250 ttgttcaattatcctgcctgtggatatatccacaaatatcacgcactcaagtaaacctgg 191
Query: 305 gaggctcctacctaacgctagctcacaggcagtgtaagcccaggaaaatctctatatgct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gaggctcctacctaacgctagctcacaggcagtgtaagcccaggaaaatctctatatgct 131
Query: 365 ctcttcttgactcaactgcctctcctgtataatgggcagagcaagagtacttgcctcaca 424
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 130 ctcttcttgactcaactgcctctcctgtaaaatgggcagagcaagagtacttgcctcaca 71
Query: 425 gggttaccatgggaattacgtgagctaatgcagtctaagcacctagaacactacagaagt 484
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 70 gggttaccatgggaattacgtgaactaatgcagtctaagcacctagaacactacagaagt 11
Query: 485 gcctagcagt 494
||||||||||
Sbjct: 10 gcctagcagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no453_l03.g1 MSMg01no453_l03.g1 CHROMAT_FILE:
MSMg01no453_l03.g1 PHD_FILE: MSMg01no453_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:39 2005
(668 letters)
>mm_chr7_56037309_56038376
Length = 1068
Score = 1125 bits (582), Expect = 0.0
Identities = 639/668 (95%), Gaps = 16/668 (2%)
Strand = Plus / Plus
Query: 1 caaagcccaccccttaagtgacccacctactccaacaagaccatacctcctaatagtgcc 60
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 caaagcccacccctttagtgacccacctactccaacaaggccatacctcctaatagtgcc 260
Query: 61 actccctgggccaagcatactcagatcacgataatctctaagcccttctttatcacattc 120
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 actccctgggccaagcatattcagatcatgataatctctaagcccttctttatcacattc 320
Query: 121 tgtcttggcctcattctcatgaaagcacttctcatctcagactgatttccagctcatttc 180
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcttggcctcattctcgtgaaagtacttctcatctcagactgatttccagctcatttc 380
Query: 181 tcactactccaacatcaagcatctcagactgacaggaattgggagagatctcacttcctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcactactccaacatcaagcatctcagactgacaggaattgggagagatctcacttcctc 440
Query: 241 ccctcactttcaactgctggttgaactctgccctctaaaaacagatgctcgagtcttaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctcactttcaactgctggttgaactctgccctctaaaaacagatgctcgagtcttaag 500
Query: 301 tcctggcgcctgtgaatgtgactgtacttggaaatagggtttgcatagagcaaggatggg 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctcgcgcctgtgaatgtgactgtacttggaaatagggtttgcatagagcaaggatggg 560
Query: 361 acctaaaccaggagctgctacctttacaaaaaggggagaacagtgcagagacagaaaatg 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acctaaaccaggggctgctacctttacaaaaaggggagaacagtgcagagacagaaaatg 620
Query: 421 gggtgaatggcatggaagaagcagaagttgaaaggatatacacacatagcatgcaaggct 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 621 gggtgaatggcatggaagaagcagaagttgaaaggatatatacacatagcatgcaaggct 680
Query: 481 tgatcgtgaccacagacatgaagaaatggcaagggggattcggccctagagctttacaaa 540
||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct: 681 tgatcgtgaccacagacatgaagaaatggcaagggggctccagccctagagctttacaaa 740
Query: 541 gaccacggctccattcacaagtcactcattgtagtattttcctctggtggcccagatcat 600
|||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 741 gaccacagctccattcacaagtcactcattgt----------------ggcccagatcat 784
Query: 601 tgataaatggtcctgggtatatttagacttgggggtaaatgactttgagtgcttggaatt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tgataaatggtcctgggtatatttagacttgggggtaaatgactttgagtgcttggaatt 844
Query: 661 gcgtgtac 668
||||||||
Sbjct: 845 gcgtgtac 852
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
