BAC Information

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BAC

Clone NameMSMg01-453N14
Chromosome7 (Build37)
Map Location 24,538,165 - 24,538,778
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934
Downstream geneV1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453N14.T7 (MSMg01no453_n14.b1)MSMg01-453N14.TJ (MSMg01no453_n14.g1)
ACCAG540765AG540766
length782769
length of high quality
(start - end)		617 (49 - 665)635 (79 - 713)
definitionCHROMAT_FILE: MSMg01no453_n14.b1 PHD_FILE: MSMg01no453_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:51 2005CHROMAT_FILE: MSMg01no453_n14.g1 PHD_FILE: MSMg01no453_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:51 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTACACAGGCGTTAACTCCAAATATCATTTTGTACATATTGTA
CTTTCTGCTGCATAATGATGAAAGTGTATGAATGAAATAACTCCATCCCA
TCTCGGTTACTCAACATACACACATTTTAACATGGACTCTGGTGTACATG
TGAACACCTGAAGAATTATAGACAGAAGGGCATCACTCCTTCATTTAAAT
TCAAGATCTTTTCTTGTGTTATAGAAATGTTTTAAGAAATGCAGATTTGC
CACTGGAGACATGGTCCTGAATCTAATGTACTTTCTGGCTTTTGTGGTAT
TGCATACTTGTATTTCCACTCATTCATGCAAGCAAAGCACTCATGCAGAT
AAAACAAAATAAGTAATATTTAAAAAATAATACAAATGTATAAAAGACAA
TGTATACTTTGTAATACAATGTGACTGAAATAAGTTACAGAGATTAGCTT
TCCACTTTTGATATATTTTTACCCTATTCATTGAAGTTATAGAATACAAA
ATGCTACTTAAGTAAATTACTACTATCTTTGCCCACAGATAAAGCTTGAT
TTACATACATAGCACCTATGTGGAGTAAAGCCACAGGGACCAAATCATAT
CATTGATTTTTAATATTCTATAGTTTATCTCTTTTACTAAGAAGTCAGAT
GCTGGATACATAACTGATTCATCTAACCTTCTCCCAANCATGCTNCAATC
AATAACATCATCACAGTTGAAAACATTTCANG

NCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCATTCTAAGACTTTTAT
CATGAATGGGTGTTGGATCTTGTCGAATGCTTTTTCTGCATCTAACAAGA
TGATTATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTG
ATGGATTTTCATATGTTAAACCTTCCCTGCATCCCTGGAATAAAACCTAC
TTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGTGA
GAATTTTACTGAGTATTTTTGCATCGATATTTATAAGGGAAATTGGTCTG
AAGTTCCCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAAT
GGTGGCTTCATATAATAAGTTGGGTAGAGTTTCCTCTACTTTTATTTTGT
GGAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGGTAG
AACTCTGCACTAAATCCATCTGGTCCTGGGCCTTTTTTGGCTGGGAGAGT
ATTAATGACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGATCCT
TAACTTGATCCTGATTTAATGGATACAGAAAATGTTGTACATTTACACAC
TGCAATACTACTAAGCTATTAAAAAATGAATTCATGAAATTCCTAAGCAA
ATGGATGGACCTGGAGGGTATCATCCTGAGTGAAGTACCCAATCCAAAGG
AACTCGAACATATGTACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_n14.b1 MSMg01no453_n14.b1 CHROMAT_FILE:
MSMg01no453_n14.b1 PHD_FILE: MSMg01no453_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:51 2005
         (617 letters)



>mm_chr7_24537961_24538978
          Length = 1018

 Score = 1133 bits (586), Expect = 0.0
 Identities = 607/614 (98%), Gaps = 1/614 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctacacaggcgttaactccaaatatcattttgtacatattgtactttctgctgca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 gaattctacacaggcgttaactccaaatatcattttgtacatattgtactttctgctgca 759

                                                                       
Query: 65  taatgatgaaagtgtatgaatgaaataactccatcccatctcggttactcaacatacaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 taatgatgaaagtgtatgaatgaaataactccatcccatctcggttactcaacatacaca 699

                                                                       
Query: 125 cattttaacatggactctggtgtacatgtgaacacctgaagaattatagacagaagggca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 cattttaacatggactctggtgtacatgtgaacacctgaagaattatagacagaagggca 639

                                                                       
Query: 185 tcactccttcatttaaattcaagatcttttcttgtgttatagaaatgttttaagaaatgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tcactccttcatttaaattcaagatcttttcttgtgttatagaaatgttttaagaaatgc 579

                                                                       
Query: 245 agatttgccactggagacatggtcctgaatctaatgtacttt-ctggcttttgtggtatt 303
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 578 agatttgccactggagacatggtcctgaatctaatgtactttactggcttttgtggtaat 519

                                                                       
Query: 304 gcatacttgtatttccactcattcatgcaagcaaagcactcatgcagataaaacaaaata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gcatacttgtatttccactcattcatgcaagcaaagcactcatgcagataaaacaaaata 459

                                                                       
Query: 364 agtaatatttaaaaaataatacaaatgtataaaagacaatgtatactttgtaatacaatg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 458 agtaatatttaaaaaataatacaaatgtataaaagacaatgtatactttataatacaatg 399

                                                                       
Query: 424 tgactgaaataagttacagagattagctttccacttttgatatatttttaccctattcat 483
           |||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||
Sbjct: 398 tgactgaaataagttacagaaattagctatccacttttgatatattttaaccctattcat 339

                                                                       
Query: 484 tgaagttatagaatacaaaatgctacttaagtaaattactactatctttgcccacagata 543
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgaagttatagaatacaaaatactacttaagtaaattactactatctttgcccacagata 279

                                                                       
Query: 544 aagcttgatttacatacatagcacctatgtggagtaaagccacagggaccaaatcatatc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aagcttgatttacatacatagcacctatgtggagtaaagccacagggaccaaatcatatc 219

                         
Query: 604 attgatttttaata 617
           ||||||||||||||
Sbjct: 218 attgatttttaata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1018
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1008
Effective search space:   611856
Effective search space used:   611856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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