Query= MSMg01no453_o13.b1 MSMg01no453_o13.b1 CHROMAT_FILE:
MSMg01no453_o13.b1 PHD_FILE: MSMg01no453_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:55 2005
(670 letters)
>mm_chr7_115072869_115073938
Length = 1070
Score = 1288 bits (666), Expect = 0.0
Identities = 669/670 (99%)
Strand = Plus / Plus
Query: 1 ggattttctgggatgttggaacattggtgaaggcttagctatatcagaattcaatcttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggattttctgggatgttggaacattggtgaaggcttagctatatcagaattcaatcttta 260
Query: 61 aaggcacttataataaaataatactaaaagagagcatgtgcatccatacaccagactaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggcacttataataaaataatactaaaagagagcatgtgcatccatacaccagactaac 320
Query: 121 acggggatagggtatgagtaaatgggttatgagaatgccaaggttccaggaggttgagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acggggatagggtatgagtaaatgggttatgagaatgccaaggttccaggaggttgagtt 380
Query: 181 tccttgaaactctttgcctcgtgagtgcttccaggcctctcagcctgccaagcagacttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccttgaaactctttgcctcgtgagtgcttccaggcctctcagcctgccaagcagacttc 440
Query: 241 actggagtgtgcgtagcaggaagacagagtatttgggtgaattgagtcaagtatttaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actggagtgtgcgtagcaggaagacagagtatttgggtgaattgagtcaagtatttaatg 500
Query: 301 tacatgttgtattacctgcaaagggatatgagtgctcaggtgtttcagaaggccgtcata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacatgttgtattacctgcaaagggatatgagtgctcaggtgtttcagaaggccgtcata 560
Query: 361 aagtgctgtattgagcagtaggaagacataggttcaagatacctaaaaaagtgtgaatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagtgctgtattgagcagtaggaagacataggttcaagatacctaaaaaagtgtgaatct 620
Query: 421 tatatacagaattttagcatcaacataatggaaatgatgttcatcaggaaaatgaacaat 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 tatatacagaattttagcatcaacataatgaaaatgatgttcatcaggaaaatgaacaat 680
Query: 481 tgtttgataaaatatgttcattatttattattttatctttcattttgaacatggcttttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtttgataaaatatgttcattatttattattttatctttcattttgaacatggcttttc 740
Query: 541 aacttgattaaaagtttaattggaatgtcctcttatatcaccatactagttagcatcaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacttgattaaaagtttaattggaatgtcctcttatatcaccatactagttagcatcaat 800
Query: 601 taacaaagtttctcattttttatggatgtcctatattctgggaaactaaagccacttcat 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taacaaagtttctcattttttatggatgtcctatattctgggaaactaaagccacttcat 860
Query: 661 tgccttttga 670
||||||||||
Sbjct: 861 tgccttttga 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_o13.g1 MSMg01no453_o13.g1 CHROMAT_FILE:
MSMg01no453_o13.g1 PHD_FILE: MSMg01no453_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:55 2005
(674 letters)
>mm_chr7_115377589_115378662
Length = 1074
Score = 232 bits (120), Expect = 6e-65
Identities = 252/302 (83%), Gaps = 22/302 (7%)
Strand = Plus / Minus
Query: 363 acatttgggccatgggagtcatggcacctt-gtctcttgaatccccatttaacagttaga 421
|||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||
Sbjct: 733 acatctgggccatgggagtcgtggca-cttcctctcttgaatccccatttaacagttaga 675
Query: 422 aagttctgatttgtaatatttttcaaatcataatttcctcaccttctacttttctgca-a 480
||| |||||||| ||||||||||||| ||||| |||||||| |||||||||||||||| |
Sbjct: 674 aagatctgatttctaatatttttcaattcatattttcctcaacttctacttttctgcata 615
Query: 481 acttggtata-catggtctctgtcgcctagagacctagaattcacttcccagaa-agtct 538
||| ||| || ||||||||||||| |||||||||||| ||||||||||| |||| | |||
Sbjct: 614 act-ggt-taacatggtctctgtctcctagagacctaaaattcacttcctagaata-tct 558
Query: 539 ctt-gaa--a----tgtt-----atctaagcattccatcagagaccatctctcatcactt 586
| | ||| | |||| |||||| |||| || |||| | |||| ||||| ||
Sbjct: 557 cctagaatgacaggtgttcaatgatctaaacattatattagaggctatctgacatcattt 498
Query: 587 ccatttctcagtccaatacattcttta--tgtttttaattagtgaatgcatatcacagaa 644
||||||||| ||| ||||||| ||||| | | ||| ||||||||||| |||||||||||
Sbjct: 497 ccatttctcggtctaatacatgctttacatatctttcattagtgaatgaatatcacagaa 438
Query: 645 tg 646
||
Sbjct: 437 tg 436
Score = 221 bits (114), Expect = 2e-61
Identities = 311/410 (75%), Gaps = 67/410 (16%)
Strand = Plus / Minus
Query: 12 tgccttctaaagtgacctggcatgcgtatgatgcacatccttaaatgcaaaatactcata 71
||||||||||||||||||||||||| |||| ||||||| ||||||||||||| |||||||
Sbjct: 1069 tgccttctaaagtgacctggcatgcatatggtgcacattcttaaatgcaaaacactcata 1010
Query: 72 cacacaaaaagaaataaac-----atttctaaa-atgaa-aaaa------aatagagaga 118
|||| ||||| ||| |||| ||||||||| || || |||| | ||||||||
Sbjct: 1009 cacataaaaa-aaa-aaaccaaatatttctaaatat-aacaaaagaggatattagagaga 953
Query: 119 ggtggtctat-ggaacttataaaatttctctgctgacagtacc---tg-t-----t--cc 166
||||| |||| ||||||||| |||||||||||||| ||||| | || | | ||
Sbjct: 952 ggtggcctatgggaacttatgaaatttctctgctggcagtatcttatgatggaaatggcc 893
Query: 167 tatgagaa------aaa------------ca-------------------gccatagtat 189
|||| ||| ||| || |||| | |||
Sbjct: 892 tatgggaacttatgaaatttctctgctggcagtatcctatgatggaaatggccacaatat 833
Query: 190 tagtacctgattttattgacaagtacattagacactgttgtcctattttacctggaaacc 249
||||| | || |||||||||||||| ||||| ||||||| ||||| |||| || ||||||
Sbjct: 832 tagtaacagactttattgacaagtatattagccactgttttcctactttaacttgaaacc 773
Query: 250 tcgacaggagaatggtatgaatcacagcacccattcaaaacatttgggccatgggagtca 309
|| |||||||| |||| || ||||||||||||||||| |||| |||||||||||||||
Sbjct: 772 tcaacaggagattggtgtggatcacagcacccattcaccacatctgggccatgggagtcg 713
Query: 310 tggcacctt-gtctcttgaatccccatttaacagttagaaagttctgatt 358
||||| ||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 712 tggca-cttcctctcttgaatccccatttaacagttagaaagatctgatt 664
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
