BAC Information

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BAC

Clone NameMSMg01-453O17
Chromosome7 (Build37)
Map Location 149,189,151 - 149,189,802
singlet/doubletsinglet
Overlap geneBrsk2
Upstream geneIfitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757
Downstream gene2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453O17.T7 (MSMg01no453_o17.b1)MSMg01-453O17.TJ (MSMg01no453_o17.g1)
ACCAG540819AG540820
length7731,261
length of high quality
(start - end)		656 (45 - 700)---
definitionCHROMAT_FILE: MSMg01no453_o17.b1 PHD_FILE: MSMg01no453_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:56 2005CHROMAT_FILE: MSMg01no453_o17.g1 PHD_FILE: MSMg01no453_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGCAAGATATTTTTATAAACTTTCTTTTCTTGGTTGTTTTTGGAA
AAGGGTGTGGGGTGGGGCCGCTGGGGCAGAGCTAGAGTTTGTGTTTCGGC
TCCTTGCTCTTGGCTATTTCTATACACATATACATATATATATATATATA
TATTTAAAGAACGATGTGGTTAGCTCTGTCCCGGGTTGTTTTATTACTAC
TTAGCAGCAGCTCCAGTTCCACACGAGAGCTCAGGATCCAGGGCGTCAGC
CTGCACTGGTCAGCTGTGCCTGCTGCCCAGAAGCACTGCCCAGTACTTCT
CTGCTGCATCAGGCTGAGGCTGATCTTGGTTTGGTGTCTGATTGAGAAGG
GGTAGAAGGCCCTGAGCTGGCACCCTACTCACACACAGGATGGCAGCAGT
ACCTCGGTTTGTTTGGTTTTTTTTTTTTTTAAATTAAAATTAAAAAGTTT
AAAAAAAAATCAAAGCCAGAAATGGAGTTAGCAGAGTGCTCTGCAGTGGG
TTCCTCTTGGAGGTGGCGAGGGCAAGGGGCCCACACCACTGCCTGCTGCC
CACCAAAGCCCACATCACTTCCCTCATCTTCAGCTTTTGTCTGTGTTCCG
TTCTGTCTGGCTGAGCCAGTCCCTCCCAGCTGGCCCAAGGTGCCTGGCAT
AGCATCAGGAGGGGCTGGGGGCAGGTTTCATGCATGCCTTTGCTCTTCCC
CTCATGTACAGATTTTAATGCTT

TAGCTTATTGCGAGTAGATCAATATATGAAAAACACAGATCGATCACTAC
CTGCCGTAGAGGAGGGGATTGGTATGAGTTCGCTCAGCATTATCCGTAGC
GATATAACGCGATCTATAATTCGACATCGACATGAATAAGCTATATAATG
TGAGATCCGCAACGCAGGACCGTGCAACTAACACTCGAACACTCTTCAGC
GGTACACCATGATGTCAGATATAATCAGTAGGCGCTGTAATGTTATCATA
ATACTGAACTGCCCTTAGTCTTACCCGCCCGCGCGAAGAATTAAATATGC
GGATGCTGTTGGTTCTATGTACTACACCGCAGCTATACGATAGTAGATCT
ATTTTTGATATCTTCCGCCGACGGGGATGTATTACGACAACAACCGTGTA
GACACGCGCACAGAGAATACGAATGAGAGAGATAAACTCAACCGGAAACC
GCGCGCCCGACGCTATTTAGTATGCTGAACCTCGCAGTCAACTCGTATTA
TCACCGTCGGGTATGGACGCGGTAATAATGGGACGGTAGAAGCCAAACAA
GACGACAAATAAACAATAAGTATAAGGACAATAGGNAGTGATACTATTGA
GGAGGACATAATCTATAATATAGCAATAGTGGACGTGCGCGCGCAGTCTG
CCATTGATACTATATGACGAGATGCGGGTCGGCGCGGGATATATAATAGC
ATATCTCGGAGGAGATAGGCACTAGATCGGTGACTAAAGACAAAGGTAGC
GCGGGCCGTATGATGCGCGACATCACCATCACCACACCGACCCCATACTA
ATCGCATAATACTCGCTACATAGCGGCTACTCGACAATACAACTATATAC
GCACACGCACAGCCGACCGGCGATATGTGTAAGCTTAATATAATGAAATA
CGACGTCACACCCGAGCACACTATAATATTAACACGCGCTCCACTGTACT
ACGGTCGATACTGAATCAAACGGTGGAGTTTCGGATATCGTAGATAGACG
ATGCGTGAAAGCGAGCGATCACGTAGGAGGATCGCTTGCGTACGGGTGAT
CCGGCGTGCGTTACTNTGTCACTCGCTGATCGAGTGTGTATACTATCATA
CCCGACGACATAGTCACACCCCACTATGCATCTTAGATAGTCTNCGAACG
GATTGTGATTTGTTGTGCTCTGTACATGTTCTGCGCATCCCTGTATATCG
ANACCATCTCGAGACGACATATCGTGTCGTCGCCGATCAACGATACGATC
ACGGTGATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_o17.b1 MSMg01no453_o17.b1 CHROMAT_FILE:
MSMg01no453_o17.b1 PHD_FILE: MSMg01no453_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:56 2005
         (656 letters)



>mm_chr7_149188947_149190002
          Length = 1056

 Score = 1247 bits (645), Expect = 0.0
 Identities = 651/653 (99%), Gaps = 2/653 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgcaagatatttttataaactttcttttcttggttgtttttggaaaagggtgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgcaagatatttttataaactttcttttcttggttgtttttggaaaagggtgt 264

                                                                       
Query: 65  ggggtggggccgctggggcagagctagagtttgtgtttcggctccttgctcttggctatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggggtggggccgctggggcagagctagagtttgtgtttcggctccttgctcttggctatt 324

                                                                       
Query: 125 tctatacacatatacatatatatatatatatatatttaaagaacgatgtggttagctctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctatacacatatacatatatatatatatatatatttaaagaacgatgtggttagctctg 384

                                                                       
Query: 185 tcccgggttgttttattactacttagcagcagctccagttccacacgagagctcaggatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcccgggttgttttattactacttagcagcagctccagttccacacgagagctcaggatc 444

                                                                       
Query: 245 cagggcgtcagcctgcactggtcagctgtgcctgctgcccagaagcactgcccagtactt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagggcgtcagcctgcactggtcagctgtgcctgctgcccagaagcactgcccagtactt 504

                                                                       
Query: 305 ctctgctgcatcaggctgaggctgatcttggtttggtgtctgattgagaaggggtagaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctctgctgcatcaggctgaggctgatcttggtttggtgtctgattgagaaggggtagaag 564

                                                                       
Query: 365 gccctgagctggcaccctactcacacacaggatggcagcagtacctcggtttgtttggtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gccctgagctggcaccctactcacacacaggatggcagcagtacctcggtttgtttggtt 624

                                                                       
Query: 425 ttttttttttttaaattaaaattaaaaagtttaaaaaaaaa-tcaaagccagaaatggag 483
           ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 625 ttttttttttt-aaattaaaattaaaaagtttaaaaaaaaaatcaaagccagaaatggag 683

                                                                       
Query: 484 ttagcagagtgctctgcagtgggttcctcttggaggtggcgagggcaaggggcccacacc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttagcagagtgctctgcagtgggttcctcttggaggtggcgagggcaaggggcccacacc 743

                                                                       
Query: 544 actgcctgctgcccaccaaagcccacatcacttccctcatcttcagcttttgtctgtgtt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 actgcctgctgcccaccaaagcccacatcacttccctcatcttcagcttttgtctgtgtt 803

                                                                
Query: 604 ccgttctgtctggctgagccagtccctcccagctggcccaaggtgcctggcat 656
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ccgttctgtctggctgagccagtccctcccagctggcccaaggtgcctggcat 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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