BAC Information

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BAC

Clone NameMSMg01-454E15
Chromosome7 (Build37)
Map Location 53,200,448 - 53,381,049
singlet/doubletdoublet
Overlap geneBC013491, Abcc6, Nomo1, Kcnj11, Abcc8
Upstream geneStk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, LOC677321
Downstream geneUsh1c, Otog, Myod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454E15.T7 (MSMg01no454_e15.b1)MSMg01-454E15.TJ (MSMg01no454_e15.g1)
ACCAG541101AG541102
length756743
length of high quality
(start - end)		242 (71 - 312)229 (317 - 545)
definitionCHROMAT_FILE: MSMg01no454_e15.b1 PHD_FILE: MSMg01no454_e15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:26 2005CHROMAT_FILE: MSMg01no454_e15.g1 PHD_FILE: MSMg01no454_e15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,380,808 - 53,381,049)(53,200,448 - 53,200,676)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAAAATCCGCGGAAT
TCAGGGGATACCCAAAAACGGGCGGGCCGGGCCAGGCAAGGTGGCTCCTC
TGCAAATCACCAGTTGACAGAGGCATCACCCTCCAGCCCCAGAGACACCT
CCTTCCTGCGGCTTTCTGCCTTGTCTGCCACTTTGTCCCCAGTGTGGTGA
CAGTCCCAACCTCTCAAACCTTAGTGACTGCATAACTTGAGCCAAGGTCT
AGATACGTGAAAGTCTGCTTGTCTCAGAGGATAACAAAGTAACAACATTT
GACAGTGGGGCTCTTTATAGCTGGCCACGGCCCAGTGCCCGTGTGTCTCC
CTGACTGGTTCCTCTAGCGTCTAAGTCTATATGCTGTGTGCGGCCACGGC
TAATGCTCAGAACCTCTCTCTCAGCTTCCAAACTGTAGGTGGCCACCCCG
ATGCTACAGGTTCTGTCAACTGCCTAGTCCAACCTGGCGACAGTCAGAGT
ACCCTGCCCAGTTGGGTGCAACTTTGTTGGCCTGAGGCTTTGGCTTGCTC
ATTTGAACCTAACTTAAATGCCAAGGCTATGAAGTCTGGGCAGACCTCCT
ACCTCTCTGAACCTCGAAGTTTCCCCCCATGAAGACTTTTCCTCCTGTTC
CCCTCTTTAAAGAACCAAGAGNTGGGGCTCTTCCCTCCCCCCATGGGCTA
AAAAGAGAGGTCTTTGGCTAACCCCACTATAAATTTTTGTGTGGCATTAA
ATAGAA

ATGATAGGGGAGGCCTGGNGGCGCCTGGTTCAAAAATGAGGNGAACNANA
GAAGTTCCCAAAAACTCCTTGAGGCAGGCTNCATCTTTGCCATTAGGATA
TCTGCTCTGCTCCCGTTTCTTCTTTGTGCATGACGACTTAACAAATTGTG
ATCATCGGCAACCAACCCACAACCAAGAACCCACCAACCAACCACAGCCC
ACCCCACCTCTCAGGGCCCTAGCATGTATAGAGCCTCTGATTTTACCCCA
GCATTCCAAATGTCACAGATCACAGAAACTATCTGCAGCTGGCCAAACTC
CAGCTGTTTNATTCTTCTGCTGTGGACAGTCTGAAGCATCCCCAAATCCC
ATATCTGGGATGAAGACGAAAACATATTCTTATAATATTTCTATGTATTT
TAAAGAAACCAAAACTCCAAAATTGTCAGTACAATCAGTGGCTTTGTGGT
ATAAGAAGTCTTTACCTATTTGAGGTTGCAAAGGTATTTTTTACTAGAAT
TTTGTTTGGCTTCTGCCTTAGGGTTTTTATTGCTGTGAGGAAACACCATG
ACAAAAAATAAGTTGGGGAGGAAAGGGTTTATTCAGCTTCTACCTCTACA
TTGCTGTTCATTACCAAAGGAAGCCAGAGCAGGAATTTTTTTTTTGTTCG
GAAACCCGGAAGCATGGAATTGTTGCTAAAGCCCTGTAAAGAAGTTGCCT
ACAGCTTCGTTTTCTTATTTCCTGGTCTCGTCTGTTTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_e15.b1 MSMg01no454_e15.b1 CHROMAT_FILE:
MSMg01no454_e15.b1 PHD_FILE: MSMg01no454_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:26 2005
         (242 letters)



>mm_chr7_53380608_53381249
          Length = 642

 Score =  414 bits (214), Expect = e-120
 Identities = 235/242 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcgggccgggccaggcaaggtggctcctctgcaaatcaccagttgacagaggcatcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggcgggccgggccaggcaaggtggctcctctgcaaatcaccagttgacagaggcatcacc 383

                                                                       
Query: 61  ctccagccccagagacacctccttcctgcggctttctgccttgtctgccactttgtcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctccagccccagagacacctccttcctgcggctttctgccttgtctgccactttgtcccc 323

                                                                       
Query: 121 agtgtggtgacagtcccaacctctcaaaccttagtgactgcataacttgagccaaggtct 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 322 agtgtggtgacagtcccaacctctcaaaccttagtgactgcacaacttgagccaaggcct 263

                                                                       
Query: 181 agatacgtgaaagtctgcttgtctcagaggataacaaagtaacaacatttgacagtgggg 240
           ||| |||||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||
Sbjct: 262 agacacgtgaaagtctgcgtgtgtcagaagataacaaagtaacagcatttgacagtgggg 203

             
Query: 241 ct 242
           ||
Sbjct: 202 ct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no454_e15.g1 MSMg01no454_e15.g1 CHROMAT_FILE:
MSMg01no454_e15.g1 PHD_FILE: MSMg01no454_e15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:26 2005
         (229 letters)



>mm_chr7_53200248_53200876
          Length = 629

 Score =  435 bits (225), Expect = e-127
 Identities = 228/229 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgctgtggacagtctgaagcatccccaaatcccatatctgggatgaagacgaaaacata 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 ctgctgtggacagtctgaagcatccccaaatcccatacctgggatgaagacgaaaacata 260

                                                                       
Query: 61  ttcttataatatttctatgtattttaaagaaaccaaaactccaaaattgtcagtacaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttataatatttctatgtattttaaagaaaccaaaactccaaaattgtcagtacaatc 320

                                                                       
Query: 121 agtggctttgtggtataagaagtctttacctatttgaggttgcaaaggtattttttacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtggctttgtggtataagaagtctttacctatttgaggttgcaaaggtattttttacta 380

                                                            
Query: 181 gaattttgtttggcttctgccttagggtttttattgctgtgaggaaaca 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattttgtttggcttctgccttagggtttttattgctgtgaggaaaca 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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