BAC Information

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BAC

Clone NameMSMg01-454G20
Chromosome7 (Build37)
Map Location 26,519,955 - 26,520,377
singlet/doubletsinglet
Overlap geneHnrpul1
Upstream geneCd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97
Downstream geneAxl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454G20.T7 (MSMg01no454_g20.b1)MSMg01-454G20.TJ (MSMg01no454_g20.g1)
ACCAG541206AG541207
length767753
length of high quality
(start - end)		426 (73 - 498)431 (78 - 508)
definitionCHROMAT_FILE: MSMg01no454_g20.b1 PHD_FILE: MSMg01no454_g20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:37 2005CHROMAT_FILE: MSMg01no454_g20.g1 PHD_FILE: MSMg01no454_g20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATGGGTTTCATATCAGCAGACATGTACCAGGACGAGTGTGAGC
ACTCTAGGAATGTGTATTGAATAATAAACAAGAGGATACACTTGTTTGTA
TCCTCTTGTAGTCCTTGTATAGAGCTGCACTCGGCTGTTAAAAGTGCCTG
CTCTGGCGGCTTTTATCTGTTCCCTGTCAGTTTTGGGGACAAGGCCAGAT
TACCTTTATCTTTAAAGCCTCAGCCTAAGCACAAGACTCAAAGATGTTAC
CAGCTTCCAGATCTTGATTTTTAAGGGTTTAGGTAAAATGTTTCTGGGCT
TTTCCTGCTGGCTGCCTAACTTGTGTATATACCAAGAGAAAATGAATGCC
TGGGATCCAGAAAAATGGCCATTTTACTCCCTGTATTGATTCTCACACTT
GTGGCTCTTGGTGGCTTTAACTAAGTTTCCAGTTAGTGTTTCTTAAGACA
AGATTTCATGGGGGCTGGTCTGGTGTGAAATTCGCGTTCCTTCTGGCTCA
GTCTTCCAGAATGTGGTATTATGGAACCCAGCAGCTTACCCTCCGGTTTT
TCTCCTAGGACTTTGAAAGTGGAAAAGATGGTGGAGCTTTCCTTTTTCAA
ATAATTTCAAATGGTATGGTGCCTTGTCTTTTTCAATCCTTAAAAAAGTT
TTTTTTGGTGTTAGGCCCCCCCTCTTTTCTTTCTTTTTGTAAAAATACTA
CCCTTGTATTTTCCCCN

NAACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
TGAGAAGCACCTGAAAAAATATTCAGCATCCTTAATCATCAGGGAAATGC
AAATCAAAATAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTTACAGTAGATGCTGGCGATGATGTGGAGAAAGAGG
AACATTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGA
AATCAGTCTGGTGGTTCCTCTTTATAATTGGACATAGTACTACCGGAGGA
TCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACAGGTA
AGAAGGACACATGCTCCACTTTGTTCATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AAGGTGGTACATTTACACAATGGAGAACTACTCATCTATTAAAAAGAATG
AATTTATGATATTCCTAGGCAAATAGTTGGACCTGGAGGGCATTATCCTG
AGTGAGGTAACCCAACCCATAAGAATTCCCACATAAGTACTCCCCGATAA
ATGGAAATTACCCCGGGAACTTTAAATACCCCCAAATATAAAAAAATTTG
TGGAAACCCTGGGAACTCCCAAAAAAAAAAACCTTTTTGTGTTTACTCTG
CCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_g20.b1 MSMg01no454_g20.b1 CHROMAT_FILE:
MSMg01no454_g20.b1 PHD_FILE: MSMg01no454_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:37 2005
         (426 letters)



>mm_chr7_26519755_26520577
          Length = 823

 Score =  770 bits (398), Expect = 0.0
 Identities = 418/426 (98%), Gaps = 3/426 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagacatgtaccaggacgagtgtgagcactctaggaatgtgtattgaataataaacaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||
Sbjct: 623 gcagacatgtaccaggacgagtgtgagcactctaggaatgtgtattg---aataaacaag 567

                                                                       
Query: 61  aggatacacttgtttgtatcctcttgtagtccttgtatagagctgcactcggctgttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aggatacacttgtttgtatcctcttgtagtccttgtatagagctgcactcggctgttaaa 507

                                                                       
Query: 121 agtgcctgctctggcggcttttatctgttccctgtcagttttggggacaaggccagatta 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 506 agtgcctgctctggcggcttttatctgttccctgtcggttttggggacaaggccagatta 447

                                                                       
Query: 181 cctttatctttaaagcctcagcctaagcacaagactcaaagatgttaccagcttccagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cctttatctttaaagcctcagcctaagcacaagactcaaagatgttaccagcttccagat 387

                                                                       
Query: 241 cttgatttttaagggtttaggtaaaatgtttctgggcttttcctgctggctgcctaactt 300
           ||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cttgagtaaaaagggtttaggtaaaatgtttctgggcttttcctgctggctgcctaactt 327

                                                                       
Query: 301 gtgtatataccaagagaaaatgaatgcctgggatccagaaaaatggccattttactccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtgtatataccaagagaaaatgaatgcctgggatccagaaaaatggccattttactccct 267

                                                                       
Query: 361 gtattgattctcacacttgtggctcttggtggctttaactaagtttccagttagtgtttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtattgattctcacacttgtggctcttggtggctttaactaagtttccagttagtgtttc 207

                 
Query: 421 ttaaga 426
           ||||||
Sbjct: 206 ttaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 823
Length adjustment: 9
Effective length of query: 417
Effective length of database: 814
Effective search space:   339438
Effective search space used:   339438
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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