BAC Information

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BAC

Clone NameMSMg01-454N13
Chromosome7 (Build37)
Map Location 143,158,913 - 143,159,152
singlet/doubletsinglet
Overlap genenone
Upstream geneDock1, LOC100043254, Foxi2, Clrn3, Ptpre, Mki67, LOC668764
Downstream geneLOC546009, EG621677, EG668771, Mgmt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454N13.T7 (MSMg01no454_n13.b1)MSMg01-454N13.TJ (MSMg01no454_n13.g1)
ACCAG541526AG541527
length750764
length of high quality
(start - end)
39 (66 - 104)241 (74 - 314)
definitionCHROMAT_FILE: MSMg01no454_n13.b1 PHD_FILE: MSMg01no454_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:10 2005CHROMAT_FILE: MSMg01no454_n13.g1 PHD_FILE: MSMg01no454_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCGCTAAACATCACTATTTCCGAGGAGGCGCGNAANNCCCA
AATTCCCTAAAATGGAATCAGGCTTTCCAAGCCATACTAATCCTGCTGTA
GCCAGGGTACTGCGCCCTTATCCTCAAGATTATTCCTATGTGNTGAAAAG
CCGTGTTGAGGGCAGGCCCCCTGTCTAACTACTTGAAAGGGTCTCTATTG
GCCTGATACATGGATTTCCAGCCCGCCAGTGGGNTCTGTTTATCCTTGAC
AAAAGCTTTTTAGCTGGTACTTCTCCTTGCNNCNNACAGNNGCCAAAAAT
TCCTATTTAATTCGNNNGGGGGTCTCNNAAAAAATTTTTTTGAACCNNNN
AAAAAAAATTTTTTGGGNNNNNAAAAAACACCCCCTTTTTAAATNTGGAA
TTTNNNATGAAAAAACACTGGNNNNCTGNNTGGAAANNCCACTCTTTCCT
CCCCGGNNAACCCTGCGGTCTCCTTCTCCTCCCCNNAAAAAACCAAAGGN
NNNNNNNNNNNNNNNNNNTAAAANAAATGAAATTTTANNNNCCCCNNTTT
TTTTNNNNNNNANNNNNCCCGGGGGGTTTTNNNNAAANTATAAANAAAAA
CACNNACCCGGCGCTAANNNNNNNNCCACCACCCACCCCCCCCCCAACAA
AAAACNCTTCCTCTTTCCAAACCAAACTTTCTTTTTTNTTTCAACCNNNN
ANNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGTGGGCGTGGGGGGGGGGG

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGTTTTGATGGTAAAAATTATTGAA
TTTTTTATTGATGCTTAAAGATGTAGTTTTAGTGTGATTATTGGCAATAT
TGTGCTGTTTTCTTTTTTTCTCTTTATGATTCTTTGGTTGTAGAGAATCC
TCAGGTTAAGCTTGAATGGGTACATGCCTGAGGGATGTGTGTAGAATCTG
CCAGCCGACTCCTCTTGTCTAACTCCTTGCGTAGGCACAAACTGCAGCCA
GCCTCCTCTGGCATTTGTAGNGTTGATAGGTAAGGGCCGACCACTGCCGA
CCACTAGGAAGCTCTCTTATGCATCCCAATCACAGAAACACCTGTGCTAA
ACACCTCTGTGCACATTGGGTTGGTTCTGTGACTATGCGGGGTGCCCTGT
AGCCTCTGAATCTCTCACTTCTCCACAGTCAACAGCTGCAGGTGTGCACA
GTGGGGGCTGCTGAGGTCTGATGAGAGGCCCTATGATGAGAGATCTGAAT
CTAGGATGACACATTTGCCTCCCCCGTGGCTGCACCCACATTATCTCTGT
TTATTGAGAGTGGAGAAGAAGGCTTACTCTTTCGGGCCCCCCTGTTTGTT
TTTTATTTTTTTGGGGGGAGAAAAAAAGCGCGAAGTAGTTTTCCCCTCAA
GGGAGAATTCTTTTGGGCGCCGGGTGGCCCTGGGTGTTGATCTCCCCCTT
TCCCATTTTTTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_n13.g1 MSMg01no454_n13.g1 CHROMAT_FILE:
MSMg01no454_n13.g1 PHD_FILE: MSMg01no454_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:10 2005
         (241 letters)



>mm_chr7_143158713_143159353
          Length = 641

 Score =  441 bits (228), Expect = e-128
 Identities = 237/240 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggttttgatggtaaaaattattgaattttttattgatgcttaaagatgtagttttagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggttttgatggtaaaaattattgaattttttattgatgcttaaagatgtagttttagt 260

                                                                       
Query: 61  gtgattattggcaatattgtgctgttttctttttttctctttatgattctttggttgtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgattattggcaatattgtgctgttttctttttttctctttatgattctttggttgtag 320

                                                                       
Query: 121 agaatcctcaggttaagcttgaatgggtacatgcctgagggatgtgtgtagaatctgcca 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaatcctcaggttaagctcgaatgggtacatgcctgagggatgtgtgtagaatctgcca 380

                                                                       
Query: 181 gccgactcctcttgtctaactccttgcgtaggcacaaactgcagccagcctcctctggca 240
           |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 gccgactcctcttgtctagctccttgcgtaggcccaaactgcagccagcctcctctggca 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)