BAC Information

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BAC

Clone NameMSMg01-455A06
Chromosome7 (Build37)
Map Location 6,345,927 - 6,346,466
singlet/doubletsinglet
Overlap geneZfp28
Upstream geneV1rd4, EG665163, V1rd10, EG630071, EG665255, EG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78
Downstream geneLOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, Usp29, LOC627961, Aurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455A06.T7 (MSMg01no455_a06.b1)MSMg01-455A06.TJ (MSMg01no455_a06.g1)
ACCAG541655AG541656
length737738
length of high quality
(start - end)
459 (70 - 528)540 (74 - 613)
definitionCHROMAT_FILE: MSMg01no455_a06.b1 PHD_FILE: MSMg01no455_a06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:24 2005CHROMAT_FILE: MSMg01no455_a06.g1 PHD_FILE: MSMg01no455_a06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:24 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTTTCCCTCTGTACTTCTCTATATATATATATATTTTTTACG
ATTTATTTTATGTATATGAGCACACCATTGCTCTCTTCAGACACATCAGA
AGAGGGCATCAGATCCCATTACAGATGGCTATGAGCCATCCTGTGGTTGC
TGGGAGTTGAACTCAGGACCTTCAGAAGAGTAGTCAGTGCTCTTAACTGC
TGAGCCATCTCTCCAGCCCATGTACTCCATTTTTAATTGGGTTATTTGGT
TTGCTTATGTGTTCCTACCAAGGCATTCAAGGCTATTTTCCACGCTCTTA
TTTAGTGTATCCAGTTTTATGTTGAGGTCTTTTTATCTACTTGGACTTGA
GTTTTGTGCTGGCTGATAAATATGAATATTTGCATTCTTCTACATGTGGA
CATCCAATTAGACCAGCACCATTTGTTGATCCTTCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCTCTCTCCCCCCTCTCTCTCTCCTTCCTTCT
TATTTCCCTCCTTCCTTCCTTCCCTCTTTTTTCTCACTTTCTCTCTCTCT
TCTCCTTTCCCTTCCTTTACTTCCCTTTCTCCCCTTCTTTCCTTTCTTTC
TCAATCCCCTTTTTTTTTTCTTCCCTTCCTTCCATTGTATTATCCTCCAT
CCTTTCTTTCTACTCTACTCCTGTTTACCGCTGTCCN
CCATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGGTGAACGGTAAGGGAGGAGCTCT
GGGTGAAAGTTTTCTTACATTCATTACATTGGAAAAGTTTTTTTCCTGAA
TAGATTCCGGTTTCCTTTACGACTACTGGATTTGGGGAGAAACTTTTACC
TGAGTCACAGTTATGACTTCTCTTGTCTGAACTGTTCAAATGAAACCATC
TTCCAGATTCGATACACATACCATCTCTCCCCTCTGAGAAGGCTCTGTTT
GGAGTGACTGTCTCTTGCTCATTCCTTTCAAACGTACACTCAGAATCCTG
ATCTCTGAAAGTGGAGCACTCAAGTTTAGTGCTCCAAGCTCTGCCTGTTA
CCCGTTCAGCACGTGAGTCCTGCCTTGGAAGCAGATCCTGGGCTTCCTGT
ACAGACTGCTGGCCTGAAATAGACCAAGAAAACACATCTCCTTTATTATG
TATCAAGAGGAAGATATCTGCTTCCGTCTGCTTGAAATATAACCTCTGTC
TGCCCTGTCTTGCTGGCACGAAAGAGCCACTCGGAATAACATTTTTGTTT
CCCTGCAATACTTGAGTCAAAAATTCCAAACTTGACACTACCCNGAGAGA
GAAAGAGAGACTGAGAGAGTCCGAGAGCGAGACCCTCACCCTCTCTTATA
GAGACAGAGTGAGACTGTTCTTTTCTCACCGCACTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_a06.g1 MSMg01no455_a06.g1 CHROMAT_FILE:
MSMg01no455_a06.g1 PHD_FILE: MSMg01no455_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:24 2005
         (540 letters)



>mm_chr7_6345727_6346666
          Length = 940

 Score =  975 bits (504), Expect = 0.0
 Identities = 531/540 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggtgaacggtaagggaggagctctgggtgaaagttttcttacattcattacattgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tctggtgaacggtaagggaggagctctgggtgaaagttttcttacattcattacattgga 681

                                                                       
Query: 61  aaagtttttttcctgaatagattccggtttcctttacgactactggatttggggagaaac 120
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 680 aaagtttttttcctgaacagattccggtttcctttacaactactggatttgaggagaaac 621

                                                                       
Query: 121 ttttacctgagtcacagttatgacttctcttgtctgaactgttcaaatgaaaccatcttc 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 620 ttttacctgagtcacagttatgacttctctcgtctgaactgttcaaatgaaaccatcttc 561

                                                                       
Query: 181 cagattcgatacacataccatctctcccctctgagaaggctctgtttggagtgactgtct 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 560 cagattcgatacacataccatctctcccctctgagaaggctctgttcggagtgactgtct 501

                                                                       
Query: 241 cttgctcattcctttcaaacgtacactcagaatcctgatctctgaaagtggagcactcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cttgctcattcctttcaaacgtacactcagaatcctgatctctgaaagtggagcactcaa 441

                                                                       
Query: 301 gtttagtgctccaagctctgcctgttacccgttcagcacgtgagtcctgccttggaagca 360
           ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 440 gtttagtgctccaagttctgcctgttacccgttcagcatgtgagtcctgccttggaagca 381

                                                                       
Query: 361 gatcctgggcttcctgtacagactgctggcctgaaatagaccaagaaaacacatctcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gatcctgggcttcctgtacagactgctggcctgaaatagaccaagaaaacacatctcctt 321

                                                                       
Query: 421 tattatgtatcaagaggaagatatctgcttccgtctgcttgaaatataacctctgtctgc 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 320 tattatgtatcaagaggaagatatctgcttccatctgcttgaaatataacctctgtctgc 261

                                                                       
Query: 481 cctgtcttgctggcacgaaagagccactcggaataacatttttgtttccctgcaatactt 540
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cctgtcttgctggcacgaaggagccactcggaataacatttttgtttccctgcaatactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)