BAC Information

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BAC

Clone NameMSMg01-455B16
Chromosome7 (Build37)
Map Location 114,768,829 - 114,769,374
singlet/doubletsinglet
Overlap genePpfibp2
Upstream geneGm1966, LOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, 5330417H12Rik
Downstream geneCyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455B16.T7 (MSMg01no455_b16.b1)MSMg01-455B16.TJ (MSMg01no455_b16.g1)
ACCAG541723AG541724
length732737
length of high quality
(start - end)		569 (41 - 609)468 (72 - 539)
definitionCHROMAT_FILE: MSMg01no455_b16.b1 PHD_FILE: MSMg01no455_b16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:31 2005CHROMAT_FILE: MSMg01no455_b16.g1 PHD_FILE: MSMg01no455_b16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGATCCGCGGA
ATTCTAATTTTCCTCACCTTGTTTGTTTTCTCATCTAATAGAGGGAGAAT
AGTTCATAACTTCCCTGGGAGGATTAAATGAGATAAAGTTGGATAATTCC
TGATCCATGTAGCTAACAAGTTTCTGTCCAACAAAGGAAGAGAATATAAA
GAAGAATTGGGCCTCACATCAATTAAGCTTTGGTCCTGTGCCAGCCATAC
CACACAGCTTTCTCGCTGTCTTTTAGTTTAGTTTTTTTTTTTTTTTTTGA
AACATGTCTCACTATGTGGCTTTGACTGTCTTGCAACTCTTATGTAGATC
AGAATGGTCTTCAACTCAGAAATTCACTTGCCTTTGCTTCCCAAGTGCGA
AGATTAAAGCTGTCCACTGCTATGCCCTGCCAGTGCTGTTCCATCCACCC
ATGTCACCAGTGCAGGCTCGGGGTTAGGGAGAATAGCGTGTGGGTTTCAC
TGTAGGGACTGTGATGTTTCTGACTTTTTTTTTTTCCCTGTGGCATTTCT
TTGTTATTTGCTTATTTCTATACTTTTCTTATCATTGAATTAAGTAAATT
CTTCTCCAATTATATAAGCAGTGTTCAGATGCCTCTGGTGTTCTCGGCTT
CATGTTACTGCGGAGACCTCTTTCAGAGCTTAAGGCTGGCTTTTTCCATG
CTTTGGAAATAATTGGAACTCCGGGCTTTCCG

GATGATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATAACCCATCTGGTCCTGGGTTTTTTTT
ACTGGGAGACTTTTAATGACTGCTTCTATTTCTTTAAGAGTTATAGGACT
GCTTAGATGGATCTGATCCTGATTTAACTTTGGTATCTGGTATCTGTCTA
GAAAATTGACCATTTCATCCAGATTTTCCAGCTTTGTTGAATATATGCTT
CTGTAGTAGGATCTGATGATTTCTTTGAATTTCCTCAGTTTCTGTTGTTA
TATGTACCTTTTCATTTCTGATTTTGTTAATTTGAATACAGTCTCTGTGC
CCTCTGGTTAGTCTGATTAAGGGTTTATCTATCTTGTTTTTCTTGAAGAA
CCAGCTCCTGCTGTTGTTGATTCTTTGTAGAGTTCTTTTTGTTTCTACTT
GGTTGATTTCTCCACTGAGTTTGATTATTTCTTGCCTTCAACTCCTCTTG
GGTTTATTTGTTTATTTTTGTTCTAGAGCTTTCAGGTATGCTGTTAACCT
GGTAATGTGTGTCCTCTCCAGTTTCTTTTGTAGGCAATCAGAGCTGAAGC
TTCTTCTTAACACTGCTTTCCTTTTGTCCCATAAATTTTGAGTATGTTGC
GGTTTTATTTTCATTAACTCCTAAAATTTCCCTATTTTTTTTATTTCTTC
CCTTGATCCTTTTATCCTTGTAGTTGTGTGTCCGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_b16.b1 MSMg01no455_b16.b1 CHROMAT_FILE:
MSMg01no455_b16.b1 PHD_FILE: MSMg01no455_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:31 2005
         (569 letters)



>mm_chr7_114768606_114769574
          Length = 969

 Score = 1056 bits (546), Expect = 0.0
 Identities = 546/546 (100%)
 Strand = Plus / Plus

                                                                       
Query: 24  tcaccttgtttgttttctcatctaatagagggagaatagttcataacttccctgggagga 83
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tcaccttgtttgttttctcatctaatagagggagaatagttcataacttccctgggagga 283

                                                                       
Query: 84  ttaaatgagataaagttggataattcctgatccatgtagctaacaagtttctgtccaaca 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttaaatgagataaagttggataattcctgatccatgtagctaacaagtttctgtccaaca 343

                                                                       
Query: 144 aaggaagagaatataaagaagaattgggcctcacatcaattaagctttggtcctgtgcca 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aaggaagagaatataaagaagaattgggcctcacatcaattaagctttggtcctgtgcca 403

                                                                       
Query: 204 gccataccacacagctttctcgctgtcttttagtttagtttttttttttttttttgaaac 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gccataccacacagctttctcgctgtcttttagtttagtttttttttttttttttgaaac 463

                                                                       
Query: 264 atgtctcactatgtggctttgactgtcttgcaactcttatgtagatcagaatggtcttca 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 atgtctcactatgtggctttgactgtcttgcaactcttatgtagatcagaatggtcttca 523

                                                                       
Query: 324 actcagaaattcacttgcctttgcttcccaagtgcgaagattaaagctgtccactgctat 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 actcagaaattcacttgcctttgcttcccaagtgcgaagattaaagctgtccactgctat 583

                                                                       
Query: 384 gccctgccagtgctgttccatccacccatgtcaccagtgcaggctcggggttagggagaa 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gccctgccagtgctgttccatccacccatgtcaccagtgcaggctcggggttagggagaa 643

                                                                       
Query: 444 tagcgtgtgggtttcactgtagggactgtgatgtttctgactttttttttttccctgtgg 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tagcgtgtgggtttcactgtagggactgtgatgtttctgactttttttttttccctgtgg 703

                                                                       
Query: 504 catttctttgttatttgcttatttctatacttttcttatcattgaattaagtaaattctt 563
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 catttctttgttatttgcttatttctatacttttcttatcattgaattaagtaaattctt 763

                 
Query: 564 ctccaa 569
           ||||||
Sbjct: 764 ctccaa 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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