BAC Information

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BAC

Clone NameMSMg01-455H01
Chromosome7 (Build37)
Map Location 151,212,388 - 151,212,709
singlet/doubletsinglet
Overlap genenone
Upstream geneR74862, Cd81, Tssc4, Trpm5, Kcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498
Downstream geneShank2, Cttn, Ppfia1, Fadd, Tmem16a, LOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455H01.T7 (MSMg01no455_h01.b1)MSMg01-455H01.TJ (MSMg01no455_h01.g1)
ACCAG541979AG541980
length725866
length of high quality
(start - end)
322 (319 - 640)---
definitionCHROMAT_FILE: MSMg01no455_h01.b1 PHD_FILE: MSMg01no455_h01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:57 2005CHROMAT_FILE: MSMg01no455_h01.g1 PHD_FILE: MSMg01no455_h01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACTTTTCAACAAAAGACCTGGGTTGTAGCTGAAACGTGCGTGCAG
AGACAGTGGTGTCGCAAGCCACCAGCAGGCTACATATGTATGACACACAA
AGGAATTCATCGTCAGACCTGAGTCCCCTCCACAAGATGGTTCATTATGT
ATGTGCACATATTTTCAAACTGCAAGCCGTCTGGCATCCCTGGGGATGCA
GGATTCTTATCTTGTGATACTGTCACATCAGGTTTGAATACAGACCCTTG
TTAACTCCACATGTTTGTATGAGGGGCTGGTGAGCTGGCTTAGCAGTTAA
GAGCATGCTCTTCCAGAAAACAGATTTCTGTCCCTGTTGCTCACAGCCTC
CTGGAACTCCAGCTCCAGGGGCTCTGATGCCCTCTTCTGGCCTCCACGGG
TACCTGCACTCCTGTGGCATGTACTCACACAGGCACAAGTAATAAAGATA
AGTCTAAAAAGAGGATAGTGCATGCATGAACAAGTGAATGCTAAAAGTTA
CTTTGAAGCCGGTGCCTAACCAAGATGGACAGGGAGGGCTGAGTCCTTCA
ACCCCAAACCTTGGGTGCCTTGCTGGATCTTTGTGTGGCTGAGAAGATGC
TGATAGAAATCATGAATGTGTTCGGCTAGTGAATACAGGAAGGCTCACTA
GTCCTGAGATGCCAGATTAATTAAT
CATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTTTCTCGCGCAATTCCTACACTGAGGTTTTCCCACCTATGTG
CACTTCCCCCAATATTCCACCCACACACCATCACCACAGCACACCATCCC
ACACCCACCACCAGAGTTCTCCTTTCTCTTTTTTTCCTCTTCTTTTTCTT
CTTCCCCCTCCTCCTCCCTTCTCTCTCCCCCTCCTTTTCTGTTCTTCTTT
TTCTTTCCTCTCCTTTTTCTTTCCCTCCTCCTCCTCTCCCTTTTTCTCCC
CCCCCCCTTCCCTCTTTCCCTCTTTTTTTTTTTTCTTTTCCTCTCCTCTT
TTTCCCTTTCCCTTCCCTTTTTCTCCCCCCCCCTCCTCTCTTTCTTTTCT
TTTCCTTCCTCTTCCTTCTCCCCCCTCTCCCTTTTTCTTCTCCCCCCCCT
TCCCTTTTTCTTTTTTCTCTTTTTTTTCTCTTCCTTCCCCCCTTCTTTTT
TTCCTCTTTTTTCCCTTTCTCTTCCCTCTTTTTCTCCCCCTGTTTTTTTT
TTCTCCTTTCTCCCCCTTTTCTTTCCTCTCCCCCCCCTCTCCCTTTTTTC
TCCCCCCCTTCTTCCCCCCCTTCCCCTTCCTCTCTTCCCCCTCCCTCCTT
TTCTCTCCCCTTCCCCTTTTTTCTCTTTCCCCCCCCCCTCCTTACTCCTT
TTCTCTCCCTTTCTTTCTTTTTTTTTTCTCCCTCCCCCCTTCTTTCTCCT
CCCTCTTCTTCCCCTTTCCCTCTTTTCTCTCCTTTTCTTCTTCCTCTCTC
TTTTTCTTCCTCTCTTTCCCCTCCCTCCCCCTCCTACTCCCTCCCTCTCC
TTTTCCTCCTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_h01.b1 MSMg01no455_h01.b1 CHROMAT_FILE:
MSMg01no455_h01.b1 PHD_FILE: MSMg01no455_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:57 2005
         (322 letters)



>mm_chr7_151212188_151212909
          Length = 722

 Score =  607 bits (314), Expect = e-178
 Identities = 320/322 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaggggctggtgagctggcttagcagttaagagcatgctcttccagaaaacagatttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaggggctggtgagctggcttagcagttaagagcatgctcttccagaaaacagatttc 260

                                                                       
Query: 61  tgtccctgttgctcacagcctcctggaactccagctccaggggctctgatgccctcttct 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tgtccctgttgctcacagcctcctggaactccagctccagggactctgatgccctcttct 320

                                                                       
Query: 121 ggcctccacgggtacctgcactcctgtggcatgtactcacacaggcacaagtaataaaga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ggcctccacgggtacctgcactcctgtggcatgtactcacacaggcacaagtgataaaga 380

                                                                       
Query: 181 taagtctaaaaagaggatagtgcatgcatgaacaagtgaatgctaaaagttactttgaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagtctaaaaagaggatagtgcatgcatgaacaagtgaatgctaaaagttactttgaag 440

                                                                       
Query: 241 ccggtgcctaaccaagatggacagggagggctgagtccttcaaccccaaaccttgggtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccggtgcctaaccaagatggacagggagggctgagtccttcaaccccaaaccttgggtgc 500

                                 
Query: 301 cttgctggatctttgtgtggct 322
           ||||||||||||||||||||||
Sbjct: 501 cttgctggatctttgtgtggct 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)