BAC Information

Click to search

BAC

Clone NameMSMg01-455I22
Chromosome7 (Build37)
Map Location 20,135,720 - 20,136,173
singlet/doubletsinglet
Overlap geneBC024868
Upstream geneEG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1
Downstream geneGemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455I22.T7 (MSMg01no455_i22.b1)MSMg01-455I22.TJ (MSMg01no455_i22.g1)
ACCAG542069AG542070
length727762
length of high quality
(start - end)		457 (75 - 531)237 (66 - 302)
definitionCHROMAT_FILE: MSMg01no455_i22.b1 PHD_FILE: MSMg01no455_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:06 2005CHROMAT_FILE: MSMg01no455_i22.g1 PHD_FILE: MSMg01no455_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGGTTTTCCGGACTACAGAGTGAGACTCTACTCCAAAAAACCA
CAAAACAAACCAAAACCACACACATACCCAGAAGACATCCAAATATAAGC
AGCAGCATAAACACAGCACTACTTTACTGCTTTGGTGAACATCATGGAGT
CTTGTCCCTCATGGTCTCTGTCCAGAAACACAAACTGAACCTGATGTTTC
AAATGTTCCCAACCTATGACCTGGTAAAGTCATCTATGAACTTGCTCAAA
AGCTACTCAGGGGCAAGAGGAAGATTTAAGGATTGGTTATTTCAGCGCTG
GTCATCTCTGTGGTTGAAAACTGAAAGAAACCAGCTTAGCAGAGAGGACT
GGCAAGTCAGAAACAGCAGGGGCAGCAGGGCAGGGCGGGCGGCAGTCCCC
ACAGTCCATGATGCATTTCATTCATTCATTCATTTATTTATTTATTTCCC
CGAGGCAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCAGAAATC
CGCCTGCCTCTGTGCCCCCCCCCCCCCCCCGGTATGCTGATTGCTGGTAA
TAAAGGCTTGTGCCTCCTCTGCCCGGTCCATTATGCATTTTACAGCGTAC
TTTTTTTTTGTTCCATTTATTTGAGGTTTCATGAACCCCCAACATCTCCT
GTTCCAAAACTTTGGTACACCTTCCCG

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATTCTGATCTAGACTGGGCTACTAAACAAAACTAT
AATCTCTCAAAATAAAATATAAGAAGAGGCCTAGAGAAATGGCAGTGGTA
GAGCCCCTGCCTAGAATCCCCCAGTGAGGGGCTGAGGGCATGGCTCAGTG
GTAAAGCCCCTGCCTAGAATCCCCCAGTGAGGGGCTGGGGGCGTGGCTCA
GTGGTAAAGCCCCTGCCTAGAATCCCCCAAGGAGGGGCTGGGGGTGTGGC
TCTTTTTTTTAGCCCTGCCTAGAATCCCCCAAGGAGGGGCTGGTGGTGTG
TCTCATTGGTAGAGCCCTGCCTAGAATCCCCCATGGAGTGGCTGTGTGTA
TGTCTCCCCGTTAGAGTCTTTGTCTTATTTGTTGGAACACCTTCGCTTAA
TCCTCTGCCTCCTATACCTTTCATATCTATTTTCTTTTATTGGTGTATGT
TTTATCCTGCTTGGCCTTTGCATTATCTTTGAACTCTGTACTCTTTTTTC
TTTTTATTTCTTTTTCCCGATCTTTTTCTATTTTGTCTTTCTTTTTCTTT
TATTTTTCTCTTTCTTTATTCTTATTTTCCCGTTTCTCCCCTTTTTCCTT
TTTTTTCCTCCTCTTTTTCTTTTTTTATACTCCTTCTTCCTTTTACCATA
TTTTTTTATTTTTTTTTTCTTATCTTTTCATGTACCTTATATAGTCTTCT
CCTCACATCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_i22.b1 MSMg01no455_i22.b1 CHROMAT_FILE:
MSMg01no455_i22.b1 PHD_FILE: MSMg01no455_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:06 2005
         (457 letters)



>mm_chr7_20135520_20136373
          Length = 854

 Score =  845 bits (437), Expect = 0.0
 Identities = 451/457 (98%), Gaps = 3/457 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtgagactctactccaaaaaaccacaaaacaaaccaaaaccacacacatacccagaag 60
           ||||||||||||||||||||||   |||||||||| ||||||||||||||||||||||||
Sbjct: 201 gagtgagactctactccaaaaa---acaaaacaaatcaaaaccacacacatacccagaag 257

                                                                       
Query: 61  acatccaaatataagcagcagcataaacacagcactactttactgctttggtgaacatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 acatccaaatataagcagcagcataaacacagcactactttactgctttggtgaacatca 317

                                                                       
Query: 121 tggagtcttgtccctcatggtctctgtccagaaacacaaactgaacctgatgtttcaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tggagtcttgtccctcatggtctctgtccagaaacacaaactgaacctgatgtttcaaat 377

                                                                       
Query: 181 gttcccaacctatgacctggtaaagtcatctatgaacttgctcaaaagctactcaggggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gttcccaacctatgacctggtaaagtcatctatgaacttgctcaaaagctactcaggggc 437

                                                                       
Query: 241 aagaggaagatttaaggattggttatttcagcgctggtcatctctgtggttgaaaactga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aagaggaagatttaaggattggttatttcagcgctggtcatctctgtggttgaaaactga 497

                                                                       
Query: 301 aagaaaccagcttagcagagaggactggcaagtcagaaacagcaggggcagcagggcagg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 498 aagaaaccagcttagcagagaggactggcaagtcagaaacagcaggggcagcagggcaag 557

                                                                       
Query: 361 gcgggcggcagtccccacagtccatgatgcatttcattcattcattcatttatttattta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gcgggcggcagtccccacagtccatgatgcatttcattcattcattcatttatttattta 617

                                                
Query: 421 tttccccgaggcagggtttctctgtgtagccctggct 457
           |||||| ||||||||||||||||||||||||||||||
Sbjct: 618 tttccctgaggcagggtttctctgtgtagccctggct 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 854
Length adjustment: 10
Effective length of query: 447
Effective length of database: 844
Effective search space:   377268
Effective search space used:   377268
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |