BAC Information

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BAC

Clone NameMSMg01-455K23
Chromosome7 (Build37)
Map Location 106,256,933 - 106,468,138
singlet/doubletdoublet
Overlap geneUvrag, Dgat2, Mogat2, Mtap6
Upstream geneMyo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, EG666529
Downstream geneSerpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455K23.T7 (MSMg01no455_k23.b1)MSMg01-455K23.TJ (MSMg01no455_k23.g1)
ACCAG542167AG542168
length726742
length of high quality
(start - end)
243 (71 - 313)259 (325 - 583)
definitionCHROMAT_FILE: MSMg01no455_k23.b1 PHD_FILE: MSMg01no455_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:16 2005CHROMAT_FILE: MSMg01no455_k23.g1 PHD_FILE: MSMg01no455_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,467,896 - 106,468,138)(106,256,933 - 106,257,191)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAATCCGCGGAA
TTCAGCCCCTTACGCTCTGGGGGCCCTTGTGGTAAGCTATGGCAAACTAC
AGTGCACACGACACCAATTCCACTCAGTCACGGCACATGTGGGGTCGTCA
TGCAGCTCTGTCTGGATGTGCTGATATAGAGACCTGTCTGCTCACCAAGC
CTGGCACAAGGTGTGCAGAACACGAACACTGAATGAAGGATCCCTGTGCT
CTGTAAACTCTGACTTACTTGATCTATGAAACATATGTTTATTCTACAGG
GAAATCAAAGTGTGTTTTATAGCAGATCTGACTGACGCCGGGGATTGAGA
GGAACACGCACCGGCCGCTACAGTTGGAGCACTTGATAGAGTCTCTGGTA
AACAGTAAGGCTGGCTAACAGGTAGCCAGGAACAGTGCTGAGCTCTAGGC
ATTTCTGAACAGGCCTGTGAAACCTGTGAGTTGTGGTAATGAGACTCATC
ATGTCTCCTCCCTTCTCTAGCCTGTCTCCTTCACAGTCCAGGCCCTGAGT
TCAGAAAAGACTCATGCAGGCATCGTTCTATGCTGTATACTTCATTTCTA
GTCTGCTCTGCTAAAAATAAGGCTTGCCCAGCGCTGATGCATTCATTTTC
ATACATGTCTCAAGCAGGCTCACTACGTGCACACGATAGCCTCCCTGTCT
TGATCGAATATATTTGTTGGTTCTCC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCCAGCAATGCAGTGAGTAGAAATGAA
ATAGCAATGGTGTGGAACCAGCCAGAAGCCCTGGCCGATCGGGTGTATAT
TCACAGGACTGAAGACTACAGGCTGCAGAGAAAAGCACGCATGCGCCAGC
AGACACCCAGGGCAGTATTTACAGCAGCAGGATGCACACTGGCTCGAACC
AGAAGTCAAACATGCTCACCAACAGGGGAAAAAATGATCACCTATTATAT
TCACTCAGTAGAATACTCTCATACAAATCAAACACAGCACACAGGGCCAG
CTGATCCTGACAACCAAGCCAACACACAGGCGGGCGCCAGTCACCAGGGG
CTTACTGCATTACTTCATTCACACAAAACTCAGAAACAGGGAAACTGCCC
AGCAGCACCGTTGTGCATCCTCACACATACACACAATTCCACAACGACCC
TTTCCAGATGGAGAGATGTGGGATGCTTGGTAGCTCATTGTTTTGGTTTT
GGTTTCTTGGTGCCAGGGTCTCACCATGTAGCTGAGGCTCACAACCCTCC
TGGCTATTTCCTCCCAAACCCTAGTATTACAGGCATGTACCCATGCCCAG
CTAGACACGGCCAGCTAACTGAGTAAGGCTGGTATCACCCATAAATTAGT
CCTGTATACAGAAGGCCTGTACCAACTACTTTTAATGATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_k23.b1 MSMg01no455_k23.b1 CHROMAT_FILE:
MSMg01no455_k23.b1 PHD_FILE: MSMg01no455_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:16 2005
         (243 letters)



>mm_chr7_106467696_106468338
          Length = 643

 Score =  439 bits (227), Expect = e-128
 Identities = 239/243 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggcccttgtggtaagctatggcaaactacagtgcacacgacaccaattccactcagtca 60
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 443 gggcccttgtggtaagctatggcaaactacagtgcacacaacaccaattccactgagtca 384

                                                                       
Query: 61  cggcacatgtggggtcgtcatgcagctctgtctggatgtgctgatatagagacctgtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cggcacatgtggggtcgtcatgcagctctgtctggatgtgctgatatagagacctgtctg 324

                                                                       
Query: 121 ctcaccaagcctggcacaaggtgtgcagaacacgaacactgaatgaaggatccctgtgct 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 323 ctcaccaagcctggcacaaggtgtgcagaacacgaacaccgaatgaaggatccctgtgca 264

                                                                       
Query: 181 ctgtaaactctgacttacttgatctatgaaacatatgtttattctacagggaaatcaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctgtaaactctgacttacttgatctatgaaacatatgtttattctacagggaaatcaaag 204

              
Query: 241 tgt 243
           |||
Sbjct: 203 tgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no455_k23.g1 MSMg01no455_k23.g1 CHROMAT_FILE:
MSMg01no455_k23.g1 PHD_FILE: MSMg01no455_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:16 2005
         (259 letters)



>mm_chr7_106256733_106257391
          Length = 659

 Score =  447 bits (231), Expect = e-130
 Identities = 252/259 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatcaaacacagcacacagggccagctgatcctgacaaccaagccaacacacaggcggg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 aaatcaaacacagcacacagggccagctgatcctgacaaccaagccaacacacaggtggg 260

                                                                       
Query: 61  cgccagtcaccaggggcttactgcattacttcattcacacaaaactcagaaacagggaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 cgccagtcaccaggggcttactgcattacttcattcacacaaaactcagaatcagggaaa 320

                                                                       
Query: 121 ctgcccagcagcaccgttgtgcatcctcacacatacacacaattccacaacgaccctttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcccagcagcaccgttgtgcatcctcacacatacacacaattccacaacgaccctttc 380

                                                                       
Query: 181 cagatggagagatgtgggatgcttggtagctcattgttttggttttggtttcttggtgcc 240
           |||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 381 cagatggagagacgtgggatgctcggtagctcgttgttttggttttggtttcttggtgcc 440

                              
Query: 241 agggtctcaccatgtagct 259
           ||||||||||  |||||||
Sbjct: 441 agggtctcactgtgtagct 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)