BAC Information

Click to search

BAC

Clone NameMSMg01-456F06
Chromosome7 (Build37)
Map Location 28,665,883 - 28,666,123
singlet/doubletsinglet
Overlap genenone
Upstream geneEG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik
Downstream genePrkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456F06.T7 (MSMg01no456_f06.b1)MSMg01-456F06.TJ (MSMg01no456_f06.g1)
ACCAG542657AG542658
length560785
length of high quality
(start - end)
---243 (77 - 319)
definitionCHROMAT_FILE: MSMg01no456_f06.b1 PHD_FILE: MSMg01no456_f06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:06 2005CHROMAT_FILE: MSMg01no456_f06.g1 PHD_FILE: MSMg01no456_f06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAGGGGCNNNNNNNNNNNNNNNNNAAAAAAGCNNNCCNCCCNNNNNNNNN
NNNANNNNNNNNNNCACCCNNNNNNNNNCCCCCCNCCCCCAAAATTNCNC
CGCCAAACAACNCCAATCCAAAAGGACCGNGNAANCNGCATTACCAAAAA
GAGGAATTCTTTCCCCACCAGNAATCCCGGGGNTCCTCCGGGGGCCCCCG
GGGCCCAACGGGGGGGGAGCGANNCAAATAGGGGGGGGGCGGCGGCGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGANCCCGNNNNNNNNNNNNNTTCCC
CTAAAAAAAAAATCGNNNNNNAAAAAAAAAAAAAAAAAAATCCCCCCCCC
AAAAAAAAACAATNNNNACACCCCCNCNCCCCCCCCCCCCCCCACCCCAA
CAAAACCAAAGGGGAAANNNNAGTGGGGGGGGGGAAGAGGGGCCCCCCAC
CCACACACNCAACCNCCCCCACCNCCCTCCCNCCCGGGGGGGGGGGGACA
GCGGGGNGCGGGGGATTAAGGGGNGGGGGGCGGGCGGGGGGGGAAAAGTA
AACAGCAAGA
NCCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATATTGGTATGAAGCCCTATCAGT
GTAAAGAATGTAGAAAGACCTTTGGTTGGAGCTCAGGCCAAACACTATGA
AACACTATGAATGCAATTGCTGCAGATGGACCTCAGTCGGGAAAACTCAG
GGTTCTGGTTACAGGGGAGCAAGGTGTTGGCGCGGATGACAAACAGACAC
GGACACAGAGAGAGTGTGTATCTGAATGTAATGCTTCCAAGCAAGACCAG
ACTTTTAATCCAGAATAGTACTTTTTTTTAGGGTGTCACAGCAGGCAAGG
TATATGGAAGTTATCTGACACAAAACAGAGGAATGCCTTCAAAGGACTGG
CAGGAACCAGGCAATGTTTACAGTATAGATAAAACAGCCCTGCCTAGAGT
CAGTCAATGACAGGGGCCAGGTAAGGATTTCATACCCTAGTCATAATTTA
TGCTACTCCTTCGAGTCCTGTGAAAGTTAGCCTCAGGTTGCTTCTGTTCT
ACCCGGCCTTTTATTGGATTAACGTATTCCCGTTATTTCCTTCTCAATTT
CCTAACCTTTTTTTTCCCTATTGTTTCTTGTTACTTCTCTTTGACTATTT
TAATCTTGTCTATTCTTGTCTTTTTCTCACTTTATTCTTGGTCGCTTTAT
TTCTTCCCTTTTTTTCCTATTCACCTCCCCCTCTTTCTCTTCCCTTTCTT
TATTTACCTGCTTTTTCTCTCTCCTCTATTTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_f06.g1 MSMg01no456_f06.g1 CHROMAT_FILE:
MSMg01no456_f06.g1 PHD_FILE: MSMg01no456_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:07 2005
         (243 letters)



>mm_chr7_28665683_28666325
          Length = 643

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattggtatgaagccctatcagtgtaaagaatgtagaaagacctttggttggagctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattggtatgaagccctatcagtgtaaagaatgtagaaagacctttggttggagctcag 260

                                                                       
Query: 61  gccaaacactatgaaacactatgaatgcaattgctgcagatggacctcagtcgggaaaac 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 gccaaacactatgaaacactatgaatgcaattgctgcagatgaacctcagtcgggaaaac 320

                                                                       
Query: 121 tcagggttctggttacaggggagcaaggtgttggcgcggatgacaaacagacacggacac 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 tcagggttctggttacaggggagcaaggagttggcgcggatgacaaacagacacggacac 380

                                                                       
Query: 181 agagagagtgtgtatctgaatgtaatgcttccaagcaagaccagacttttaatccagaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagagagtgtgtatctgaatgtaatgcttccaagcaagaccagacttttaatccagaat 440

            
Query: 241 a 241
           |
Sbjct: 441 a 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)