BAC Information

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BAC

Clone NameMSMg01-456H18
Chromosome7 (Build37)
Map Location 68,073,262 - 68,073,408
singlet/doubletsinglet
Overlap genenone
Upstream geneSnrpn, Snurf, EG664849, LOC100041201, LOC100041211, LOC664896
Downstream geneLOC100041229, LOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943, B230209E15Rik, EG620934
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456H18.T7 (MSMg01no456_h18.b1)MSMg01-456H18.TJ (MSMg01no456_h18.g1)
ACCAG542776AG542777
length836757
length of high quality
(start - end)
149 (66 - 214)505 (81 - 585)
definitionCHROMAT_FILE: MSMg01no456_h18.b1 PHD_FILE: MSMg01no456_h18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:19 2005CHROMAT_FILE: MSMg01no456_h18.g1 PHD_FILE: MSMg01no456_h18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTATTTGCCTTAGTATAAATTAATAAGTAGGTCTTTCTCTTTCTGT
CTCTGTCTTCCTCTCTCATATATACACACAAATATACTTTTGAGTAGATG
TCATTAGTGTGACTTAAGGGATGGGAATGGAAAAATATGGATGGGGATGA
AGTTAGGATTGACAGGATGTCTTTGTTTGTCTCTCCTCCGTTTTCGTTCG
TGTAGTCCTTTTGGTACGCCCATTCGTTCAGCTTCCCTGCGTGTCTTTGC
CACCCTAGCTTTTTTTTTTTTTTTCCCTCCTTTCCATTTTTTTCTTTTTT
TCCTTCTCTTTTTTTTTTTTTTTCTAGCCCTATAGTTCAAATTTATAATG
GCTCCCTTTCCTTTGTTGTTTTTACCCCCTACCATTTTTTCTATCTTTCC
TTTTCTCCTTTTTTCACTTCTTTATTCTCCCCCCTCCTTTTCTTTCCGCT
TATATTCATTATTTCCCTCTGTTGTTGTCGTTTTTCTTACCTTCTATACC
TCCGTTATCCTTTTTTTTTATTTTTTCTTTCTCCTATTCTCCATTCGCCC
CTTTTTTTTTTATCTCCCATTTTCTTCCTTCCTTCCACACTTTACACTTT
GTTTTCTCCATTCACTTATTTCTTTTTTTCTTCTATTGTCATCTCCATTC
TTCCTTTTTTTCTTTTTCTCTCCCTTCTTTCTTTTCTTCCTCCACTCACT
TGTTTTTTCCATTTTTCTTCTTTCTCTCTTTTTTTATCCTTGTTTTTCCT
CTTCTACCTTTCCATTATCCGCTCTTTTCTTTCCTN
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCTGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTACACTACACTCCAGTCAGAATGGCT
AAGTTCAAAAATTCAGGTGACAGCAGATGCTGGCATGTCCCAACCGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGTTCCCTCAACAGAGGAATGGATACAGAA
AATGTGGTACATTTACACAATGCAGTACCACTCAGCTATTAAAAAAAATG
AATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTG
AGTGAGGTAACCCAATCACAAAGGAACTCTCACAATATGTACTCACTGAT
AAGTGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAAT
TTGCTAAACGCATGATATTCAAGAAGAACGAAGACCAAAGTGTGGACACT
TTGCCCTTTCTTAGAAATGGGAACAAACACCCATGGAAGGAGAACAGAGA
CTAATTTGGAGCTGTGACGAAAGGATGTACCCTTCTAGGATTGTCATATG
CAGGGATCCCTTCCCAAATCTCCCAACGGTGAACCATTTGCTACCTTACC
AGTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_h18.b1 MSMg01no456_h18.b1 CHROMAT_FILE:
MSMg01no456_h18.b1 PHD_FILE: MSMg01no456_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:19 2005
         (149 letters)



>mm_chr7_68073062_68073610
          Length = 549

 Score =  284 bits (147), Expect = 1e-81
 Identities = 147/147 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtataaattaataagtaggtctttctctttctgtctctgtcttcctctctcatatatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtataaattaataagtaggtctttctctttctgtctctgtcttcctctctcatatatac 260

                                                                       
Query: 61  acacaaatatacttttgagtagatgtcattagtgtgacttaagggatgggaatggaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacaaatatacttttgagtagatgtcattagtgtgacttaagggatgggaatggaaaaa 320

                                      
Query: 121 tatggatggggatgaagttaggattga 147
           |||||||||||||||||||||||||||
Sbjct: 321 tatggatggggatgaagttaggattga 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 549
Length adjustment: 8
Effective length of query: 141
Effective length of database: 541
Effective search space:    76281
Effective search space used:    76281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)