BAC Information

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BAC

Clone NameMSMg01-456K23
Chromosome7 (Build37)
Map Location 62,382,012 - 62,382,401
singlet/doubletsinglet
Overlap geneLuzp2
Upstream geneMrps33p, LOC622146
Downstream geneLOC668796, Siglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456K23.T7 (MSMg01no456_k23.b1)MSMg01-456K23.TJ (MSMg01no456_k23.g1)
ACCAG542929AG542930
length803767
length of high quality
(start - end)
62 (70 - 131)484 (81 - 564)
definitionCHROMAT_FILE: MSMg01no456_k23.b1 PHD_FILE: MSMg01no456_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:35 2005CHROMAT_FILE: MSMg01no456_k23.g1 PHD_FILE: MSMg01no456_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGAA
TTCTTGTTAATACTGCAACAAGTTTTAATTGGATACTTTGGGTATTTGGG
GGGGGTTATATCTATTTTCGGGGGTTCTTTATATCTTATGATCATTATTC
CTTCATCGTTCTTACTCGCACGAAGCATCACGCCTCATTCTATATGACAA
TCCTTTCTCTCCTTCTACGTTTCCTTTGTCCCCTCTACCTATTACCTTTT
TTTTTCCTTCCTCCTTCTACCCCCCCCCCTCATTTTTATAAATAACCCCA
GCACAACACCACCTCTTCTTCTTTTCCCCCCCACACCCCCCATCGTCCAA
ACACATTTTTTTTTTCCACATCCCTATTTTTTTCCTCATTCCCTCCCTAA
ACCCCAAATCATTCCCTCTTTCCCCCCCACCCATACTCCCCATTTTCACA
CCCCTTCCACTATTATTTACCCTTTTTTCCTCTCTCTCCCATTCTCTCCC
AATACACTACCTTCACCCTTCTACCCCCCCCCCTATTCCCCCATTCCATA
TTACCCCTCCCTCACCCCTTACCCATCCTACCTCACATATCTCCCTCCTT
CCCCCCCTCTATCTTTTAACCTCCAATTTTACATATACCTTTATTTTATC
TCCCCCCCAACTCTCTTTCCACTTCATCATATCATACTTTTTTTTCTCAT
AAATTTAAACATCATCCTATCCCTAGCACCCTATACCCCCTCCATCACCT
TTCATCCTCAACCTTATCTTCCTCCCCCCACCAAATACTACCCACCCCCC
CCC
NNCCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAAAAGAGGCCTCATAAAA
TTGCAAAGATTCTGTAAGGCAAGGGACACTAACAATAGGATAAAATGGCA
ACCAACTGATTGAGAAAACATTTTTACCAACCCTGCATCTGATAGAGGGC
TAATATCTAATATATACAAAGAACTCAAGAAGTTAAACTTCAGAAAACCC
AAGAACTCTGTTAAAAATGAGGTACAGAGCTAAACAAAGAATTCTCAACT
GAGGAATTCTGGATGGCTGAGAAGCACTCTATTAGAAAGATCTGTTTCTA
AACTAAGTTGGAGTCTACTTGAAGTTTTGTTTTGCTATTTTTATTTTTCT
CAGAACAGGATTTCATATATCTCAGGGTAGCAGGAAACTGGTTATATAAC
CAATTCTGGTCTTGATTTTTGGTCTTGATTATAACTACCATTATATCAGA
CTTGTATGCTGTGAATTAATTATTTTGAAGAATATGTATAAAATTGAAAA
ATTAGATATGAGGCCTCAGATATTGTAATTTGGAAAAAATGCTCTTGAAA
TGTAATTTATAGCACAATTTTCTCATACTTGAAATTGGAAATTCAGCACT
TTCATAGGGGGCTAGTTAAAATATAAAGGCCGATATTAAATACCGAAAAA
ATAATCCTCCTCCTCAAACCGAACCCCTACAGGCCAGATGCAGTGATGGC
CAAAAAAAAGGGTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_k23.g1 MSMg01no456_k23.g1 CHROMAT_FILE:
MSMg01no456_k23.g1 PHD_FILE: MSMg01no456_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:35 2005
         (484 letters)



>mm_chr7_62381518_62382401
          Length = 884

 Score =  646 bits (334), Expect = 0.0
 Identities = 372/392 (94%), Gaps = 14/392 (3%)
 Strand = Plus / Minus

                                                                       
Query: 105 gcatctgatagagggctaatatctaatatatacaaagaactcaagaagttaaacttcaga 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 gcatctgatagagggctaatatctaatatatacaaagaactcaagaagttaaacttcaga 825

                                                                       
Query: 165 aaacccaagaactctgttaaaaatgaggtacagagctaaacaaagaattctcaactgagg 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 aaacccaagaactctgttaaaaatgaggtacagagctaaacaaagaattctcaactgagg 765

                                                                       
Query: 225 aattctggatggctgagaagcactctattagaaagatctgtttctaaactaagttggagt 284
           || |||||||||||||||||||| |||  |||||||||||||||||||||||||||||||
Sbjct: 764 aaatctggatggctgagaagcac-cta-aagaaagatctgtttctaaactaagttggagt 707

                                                                       
Query: 285 ctacttgaag------------ttttgttttgctatttttatttttctcagaacaggatt 332
           ||||||||||            ||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ctacttgaagttcactttatcattttgttttgctatttttatttttctcagaacaggatt 647

                                                                       
Query: 333 tcatatatctcagggtagcaggaaactggttatataaccaattctggtcttgatttttgg 392
           ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 646 tcatatatctcagggtagcaggaaactggttatataaccaactctgatcttgatttttgg 587

                                                                       
Query: 393 tcttgattataactaccattatatcagacttgtatgctgtgaattaattattttgaagaa 452
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 586 tcttgattataactaccattatatcagacttctatgctgtgaattaattattttgaagaa 527

                                           
Query: 453 tatgtataaaattgaaaaattagatatgaggc 484
           | ||||||||||||||||||||||||||||||
Sbjct: 526 tctgtataaaattgaaaaattagatatgaggc 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)