BAC Information

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BAC

Clone NameMSMg01-457F02
Chromosome7 (Build37)
Map Location 48,827,789 - 48,828,150
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039094, 2900093B09Rik, 4930433I11Rik, EG233164, LOC668555, EG627987, LOC100039269, LOC545955, EG628304, LOC668561, EG434172, LOC100039221, LOC668565, AI987944, EG269902, LOC100039375, EG628359
Downstream gene2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457F02.T7 (MSMg01no457_f02.b1)MSMg01-457F02.TJ (MSMg01no457_f02.g1)
ACCAG543413AG543414
length740772
length of high quality
(start - end)
273 (52 - 324)360 (83 - 442)
definitionCHROMAT_FILE: MSMg01no457_f02.b1 PHD_FILE: MSMg01no457_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:29 2005CHROMAT_FILE: MSMg01no457_f02.g1 PHD_FILE: MSMg01no457_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCACAACAAAACTAAATTCACCCATTATCTCTCCACGAAT
CCAGCCCTTCAAAGGATAATAACAGAAAAAAAAACAATACAAGGACGGGA
ACCACGCCCTAGAAAAAAACAAGAAGATAATCCCTCAACAAAATTAAAAG
AAGACAGCCACAAGAACAGAATGCCAACTTTAACAACAAAAATAACAGGA
AGCAACAATAACTTTTCCTTAATATCTCTTAATATCAATGGTCTCAACTC
CCCAATAAAAAGACATAGACTAGCAGACTGGGTACACAAACAGGACCCAA
CATTCTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTAC
CTCAGAGGGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAAAA
ACAAGCTGGAGTAGCCATTTTAATATCAGATAAAATCGACTTCCAACCAA
AAGTTATCAAAAAAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAA
ATCCTCCAGGAGGAACTCACAATTCTGAATATCTACGCTTCCAATGGCAG
GGCAGCCACATTCTTTAAAGACACTTTAGTAAAGGCTCAAAGCTCTCGTT
TGGCACTCCCTCAATTAATAATGGGGAAGACTTTCATAACACCAACTTTC
CTTCATGGGCATGGATCGGGGGAAACCGAATTTCTATTCG
NNNCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATTTCTCGGAGAATAT
GAATGAAGGGACCCATGCTGTGCTTAGAACAATTCAGAGTTATTGCAGGT
AAAATTGTGGAATATACTTCTAATAACATTGGCAGAATTGCATTATACAC
TACCCAATTGAGGAACCAGAGTAATCCATTCACTGTATAACATAAATAGG
CTGGGTACTCCGATTGATTTCTTCTGTGAGTGGCTATATTGGGAAAACCC
TTACTATTTCTTTCCTTTGAGGAATACAAAGGTAAGAGTTGAACGTATTA
AACTGGGACCCTAGGACATAGCTTAGTCAGCAAAGCTTTTGTCTAGAAAG
CTCGAGACAGAATACACCTAAAAGAAGCTGGGTGTGGTGGCACACACCTA
TAATCCTAGCCATGCTGAATTGGCAAGCGGAGACTGGCTAAACCCATCGT
GACTCTGTTCTATATTACCATGAGTGATCCACCGATTCCCATCCCCACCC
TTGATTGTTTCTTTTTTTTGAAGACCTGATTTTGTTTTTTGACCTCTTTT
CTTTGTGCTTTTTTGACTCTTTTTCTACATGTTTATTCCTGTGTACCCTC
TCTTGTTTGGTTTCTTCCCTTTCCTTTTGCTATATTATTTTTTTAACCTG
TCCATCGCTTTTTCCTTTCTCCTTTTCGCTCTCTTCCCAGTTTTGTTTTG
TACACTTATCTCTTTTTTTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_f02.g1 MSMg01no457_f02.g1 CHROMAT_FILE:
MSMg01no457_f02.g1 PHD_FILE: MSMg01no457_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:29 2005
         (360 letters)



>mm_chr7_48827589_48828350
          Length = 762

 Score =  673 bits (348), Expect = 0.0
 Identities = 358/362 (98%), Gaps = 2/362 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatttctcggagaatatgaatgaagggacccatgctgtgcttagaacaattcagagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatttctcggagaatatgaatgaagggacccatgctgtgcttagaacaattcagagtta 260

                                                                       
Query: 61  ttgcaggtaaaattgtggaatatacttctaataacattggcagaattgcattataca--c 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 261 ttgcaggtaaaattgtggaatatacttctaataacattggcagaattgcattatacactc 320

                                                                       
Query: 119 tacccaattgaggaaccagagtaatccattcactgtataacataaataggctgggtactc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacccaattgaggaaccagagtaatccattcactgtataacataaataggctgggtactc 380

                                                                       
Query: 179 cgattgatttcttctgtgagtggctatattgggaaaacccttactatttctttcctttga 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgattgatttcttctgtgagtggctatattgggaaaacccttactatttctttcctttga 440

                                                                       
Query: 239 ggaatacaaaggtaagagttgaacgtattaaactgggaccctaggacatagcttagtcag 298
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 ggaatacaaaggtaagagttgaacgtattaaactggggccctaggacatagcttagtcag 500

                                                                       
Query: 299 caaagcttttgtctagaaagctcgagacagaatacacctaaaagaagctgggtgtggtgg 358
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaagcttttgtctagaaagcttgagacagaatacacctaaaagaagctgggtgtggtgg 560

             
Query: 359 ca 360
           ||
Sbjct: 561 ca 562


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 762
Length adjustment: 9
Effective length of query: 351
Effective length of database: 753
Effective search space:   264303
Effective search space used:   264303
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)