BAC Information

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BAC

Clone NameMSMg01-457M18
Chromosome7 (Build37)
Map Location 120,877,116 - 120,877,453
singlet/doubletsinglet
Overlap genenone
Upstream geneTead1, 4632411J06Rik, LOC434227, Arntl, A630005I04Rik, Btbd10, Pth, LOC100042736, Mlstd2, EG434228
Downstream geneSpon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457M18.T7 (MSMg01no457_m18.b1)MSMg01-457M18.TJ (MSMg01no457_m18.g1)
ACCAG543778AG543779
length826778
length of high quality
(start - end)
249 (76 - 324)338 (81 - 418)
definitionCHROMAT_FILE: MSMg01no457_m18.b1 PHD_FILE: MSMg01no457_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:09 2005CHROMAT_FILE: MSMg01no457_m18.g1 PHD_FILE: MSMg01no457_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCG
CGGAATTCTCTTCTGTTCCGAATCCTGTTGATCAGTGTTGATATGACTTC
CTGAGTTCCCTGAACCAGAACAGACTAGGGAAAGAGCAGATGCTTTTCAA
GTCAGATTTCGATTTTAAGCTATGCTCTACAGCTTGCCAGCTGTGTGACC
TTGGTCACTTTACTTGCCTTCTCTGAGCCAAAGTTTTCCATCTGTAAGTG
GAAACTTATAGTCTATAATGCACAGAGCTGTATTAAATATCTTAGTGCAT
TTAATAAGTTAAATGTATTAAATGTTTCTTCCCAAAACCTGGCAGTGGGT
AGATGCCTAATATCTATACATCCCTTTGCCCTTCTCTTCCTACTCTAATG
TTAGAGGCCTGAGAAAGAGCACACCGCTGTGATACTCAGAATACCTGGGG
AGGAAACCTCTCTGGTTCTAATTAAATTTCTTACATAATTGTCCTCGGTG
TCGCACATATTAACTTACATTATGGGCGTTGGTCGCTATATTCTTTATTG
GTTTCTTAGGGTAATTTTCTTTTCGCTTCCTCGTTTCTAACCCCTTCTTT
TTTTCTTGTTCTCCTTCTGTCCCTACCTTATCCTCTATTCTTGTCATATA
ATTACTCTTTCTCTCCCTTTACTCGCTCACCTTTTTCTTTCTTTTTTCTT
CCCCTCTCCATGCTCCCNTCTCTTCCTATTTCTTTTTTTCTCTTCTTCCC
CTTCTCCCTCCTTTTTTCTTTCGTCTCTTCCCAATTCTGTCGCCCTCTCT
GCTTTCCTATGTTTCACCTCTTCTTC
NNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAATGTAAGAAAATGAATT
TCCTGGCCTCTTGCCAAAGCAGATATAAATAAATAGAGATCTAGGTTCTA
ATTCCTGAGAATTTTAATAAAGAGAAATATTTATGGTTTAAAATTACCCC
TGAAATTATGCAGCAGAGAATAGATAGTTTATGACTTCAGAGAACAAAAA
GAAACTTGCAAATACTTGGTGTTGGCAGATCAATTAAGTGGCAATACATG
CTACATTATAATTTTAATCACCATGAAATTTTTATATGGTAATGAGCGTT
AACATGACTTCATCCTTTCAAACTATGATTTAATTTATGGAATTCTTCTT
GACTGCTGCCTTATTTCTTGGGNTCTTTCTGTCTTGATCCGCAGGCATCT
TTANATTACACCCTTTCCGGTAGATATTATTTAAGACAGCCACTAACTAA
TTGAGCTCCTCTTTCCTTATCAATTAAGGAACTTGGAAGGTATTCTTACC
CCTCTTTATTTAGGCCTTTTCCCCGGAAAAAAAAGGCCGGGAATTTAAAA
AATTTTTTTATCACGAAAGGCCCCCCTTTTTTTTCCCCATTGGGGGATTT
TTTCCCCGGTTTTTATCAAATAATGTCCTTTTTTTTTTTTTTCTTTCACC
AAAACCCAACCTTTTTCCTTCTTTTTTTCGGCTACTTTTTTTCTTCCTCT
TTTTTTTCCCATGTGTCTCCCTCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_m18.g1 MSMg01no457_m18.g1 CHROMAT_FILE:
MSMg01no457_m18.g1 PHD_FILE: MSMg01no457_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:09 2005
         (338 letters)



>mm_chr7_120876916_120877653
          Length = 738

 Score =  623 bits (322), Expect = 0.0
 Identities = 334/338 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatgtaagaaaatgaatttcctggcctcttgccaaagcagatataaataaatagagat 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 aaaatgtaagaaaatgaatttcctggcctctcgccaaagcagatataaataaatagagat 260

                                                                       
Query: 61  ctaggttctaattcctgagaattttaataaagagaaatatttatggtttaaaattacccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaggttctaattcctgagaattttaataaagagaaatatttatggtttaaaattacccc 320

                                                                       
Query: 121 tgaaattatgcagcagagaatagatagtttatgacttcagagaacaaaaagaaacttgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaattatgcagcagagaatagatagtttatgacttcagagaacaaaaagaaacttgca 380

                                                                       
Query: 181 aatacttggtgttggcagatcaattaagtggcaatacatgctacattataattttaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatacttggtgttggcagatcaattaagtggcaatacatgctacattataattttaatca 440

                                                                       
Query: 241 ccatgaaatttttatatggtaatgagcgttaacatgacttcatcctttcaaactatgatt 300
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatgaaattaaaatatggtaatgagcgttaacatgacttcatcctttcaaactatgatt 500

                                                 
Query: 301 taatttatggaattcttcttgactgctgccttatttct 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatttatggaattcttcttgactgctgccttatttct 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)