BAC Information

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BAC

Clone NameMSMg01-457O20
Chromosome7 (Build37)
Map Location 59,967,975 - 59,968,469
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC654473, LOC100040608, Gas2, 1700015G11Rik, EG668783
Downstream geneEG620782, LOC100040692, Gm1865, LOC100040718
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457O20.T7 (MSMg01no457_o20.b1)MSMg01-457O20.TJ (MSMg01no457_o20.g1)
ACCAG543878AG543879
length743754
length of high quality
(start - end)		495 (74 - 568)392 (84 - 475)
definitionCHROMAT_FILE: MSMg01no457_o20.b1 PHD_FILE: MSMg01no457_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:20 2005CHROMAT_FILE: MSMg01no457_o20.g1 PHD_FILE: MSMg01no457_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTATTCTCTCGATGTTTATTTTTTTATTGTTGTGAGTTC
CTTACTTAAAGGACAATTCCACTTCCCCATTCCCCTTCCCCATTGCTTTC
TACTATGTCTTCTCAATTCCTGTTGCCAACATTCTATTCTCCAGCTAAAA
TGTTATGTGTTTCTCTCTGTCTCTCTGTGCCTCTGTCTCTCTCTCTTTGC
GTGTGTGTAAATCATATTTTAGTGATATTTCACAAAGCTATCCTTGCTTC
ATGTGAGTTTGTAATATTTACTGACTTATTGGGACAAATCTTAGTTCCCT
TTCCATGAATCACTATCCTGTTTACCCAATGCTGTGTATTGTACCCAGAC
CAAACTCTACCAGAATAAACCCTCATTTCCTGAACTCCAGCTTTGGATCA
GTTGCTTTATACTCTTTATAATAATAGACATTAATACCCCATTTAAAACT
CCCATTTAAATTCTATAAAGGAAACTCAAACATGTAAATTATACGTGCAT
AAAACATATTTATCTTATTATTCTTGAAATTACTGAAATAGGACAGCTCA
GGTCACCTGAAAAACATAAAGGATATCCCTTTTTGAACTGATTTTTGAAA
GGTTAAAGCCCTGATCTACGGATAGATGACACATAAATATCCCTTTAATT
AAATGGCTTCTGTATTTCATGCTTCAACATTTATTCCTTTCCN

NAAATTTTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCTTTAATCTTTAT
ACTGAATTTGAGAATGAAACTCACTCAGGCTGCCAAACAGAAAAAAAAAA
AATTACAATAAAGTAGGACTTGGCAAACCAAGAAAAGAAAAAGAGCTTAA
GAGAAAACTCAATAATCTGAGACACATTTCTACATATTCAGGAGTCCCCT
AAAAATACTAACCTGAAAGCTATATTTGTGGAGGACGTGTTTACTTTCCC
TTGTTGGCCTTATGGTTGCTGCCTCAGTCTTTAAGTACATATAAGCTTTG
ATCAGTTGACTTTGAGGGCTTTGTTCTTCTTTTTTAAATTTGTACTAGAT
ATTTTCTTCATTTACAATTCAAATGCTATCCCGAAAGTCCCCTATACCCT
CTCCCCCCACCCTGCTCCCCTACCGACCCACTCCCACTTCTTGACCCTGG
CATTCCCCTGTATTGGGGTATAAAAAGTTTGCAAGACAAAAGGCCATTCT
TCCCAAGGATGACCGAACAGGCCCTCTTCTGCTATATATGCGCCTAAAAA
CCACACCTCCGGGGGGAACGGATTTATTCAATTTGTTTTCCCCCCATGAG
TGGGAAAACCCCCCCCCCCTCGGGGGGGGGCTTTCCCCGGGGGAGCTTAA
CATTTTTGAACTTTTTTTTTTAATAGAATCCGCGGCCCCCGGGGGAGAGA
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_o20.b1 MSMg01no457_o20.b1 CHROMAT_FILE:
MSMg01no457_o20.b1 PHD_FILE: MSMg01no457_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:20 2005
         (495 letters)



>mm_chr7_59967775_59968669
          Length = 895

 Score =  919 bits (475), Expect = 0.0
 Identities = 490/495 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttatttttttattgttgtgagttccttacttaaaggacaattccacttccccattcc 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 tgtttatttttttattgttgtgagttccttgcttaaaggacaattccacttccccattcc 260

                                                                       
Query: 61  ccttccccattgctttctactatgtcttctcaattcctgttgccaacattctattctcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 ccttccccattgctttctactatgtcttctcaattcctgttgccaaccttctattctcca 320

                                                                       
Query: 121 gctaaaatgttatgtgtttctctctgtctctctgtgcctctgtctctctctctttgcgtg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 gctaaaatgttatgtgtttctctctgtctctctgtgcctctgtctctctctctttgtgtg 380

                                                                       
Query: 181 tgtgtaaatcatattttagtgatatttcacaaagctatccttgcttcatgtgagtttgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgtaaatcatattttagtgatatttcacaaagctatccttgcttcatgtgagtttgta 440

                                                                       
Query: 241 atatttactgacttattgggacaaatcttagttccctttccatgaatcactatcctgttt 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 atatttactgacttattgggacaaaccttagttccctttccatgaatcactatcctgttt 500

                                                                       
Query: 301 acccaatgctgtgtattgtacccagaccaaactctaccagaataaaccctcatttcctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acccaatgctgtgtattgtacccagaccaaactctaccagaataaaccctcatttcctga 560

                                                                       
Query: 361 actccagctttggatcagttgctttatactctttataataatagacattaataccccatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actccagctttggatcagttgctttatactctttataataatagacattaataccccatt 620

                                                                       
Query: 421 taaaactcccatttaaattctataaaggaaactcaaacatgtaaattatacgtgcataaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaaactcccatttaaattctataaaggaaactcaaacatgtaaattatacgtgcataaa 680

                          
Query: 481 acatatttatcttat 495
            ||||||||||||||
Sbjct: 681 gcatatttatcttat 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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