MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-458D01
Chromosome	7 (Build37)
Map Location	118,172,050 - 118,172,587
singlet/doublet	singlet
Overlap gene	Ctr9
Upstream gene	Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2, LOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1
Downstream gene	Eif4g2, LOC100043221, LOC100042658, LOC384658, Galntl4, LOC668399, LOC100042678, Usp47
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ipo7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:233726 MGI:2152414
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AA474408 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:767812 MGI:3034216
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs

name	Zfp143 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20841 MGI:1277969
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wee1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22390 MGI:103075
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Swap70 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20947 MGI:1298390
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG668368 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668368 MGI:3648395
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 6 Proteins pseudo : _no_value

name	Sbf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319934 MGI:1921831
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 121 ESTs, 3 Proteins

name	LOC668246 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668246
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Adm (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11535 MGI:108058
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	B430319F04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:619306 MGI:3588258
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Ampd3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11717 MGI:1096344
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnf141 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67150 MGI:1914400
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Xlkd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:114332 MGI:2136348
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mrvi1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17540 MGI:1338023
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ctr9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22083 MGI:109345
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eif4g2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13690 MGI:109207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100043221 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043221
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100042658 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042658
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	LOC384658 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:384658
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Galntl4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:233733 MGI:2446239
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC668399 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668399
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 16 Proteins pseudo : _no_value

name	LOC100042678 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042678
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Usp47 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74996 MGI:1922246
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ipo7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130675 GeneID:233726 MGI:2152414
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : importin 7 transcript_id : NM_181517.3

name	Zfp143 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:121247389 GeneID:20841 MGI:1277969
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 143 transcript_id : NM_009281.3

name	Wee1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114431231 GeneID:22390 MGI:103075
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : wee 1 homolog (S. pombe) transcript_id : NM_009516.3

name	Swap70 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40789274 GeneID:20947 MGI:1298390
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SWA-70 protein transcript_id : NM_009302.2

name	Sbf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149257661 GeneID:319934 MGI:1921831
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 121 ESTs, 3 Proteins product : SET binding factor 2 transcript_id : XM_001478567.1

name	Adm (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6752987 GeneID:11535 MGI:108058
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adrenomedullin transcript_id : NM_009627.1

name	Ampd3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:66792801 GeneID:11717 MGI:1096344
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : AMP deaminase 3 transcript_id : NM_009667.2

name	Rnf141 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84781807 GeneID:67150 MGI:1914400
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 141 transcript_id : NM_025999.2

name	Xlkd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131124 GeneID:114332 MGI:2136348
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : extra cellular link domain-containing 1 transcript_id : NM_053247.4

name	Mrvi1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:120431611 GeneID:17540 MGI:1338023
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : MRV integration site 1 transcript_id : NM_194464.2

name	Ctr9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678440 GeneID:22083 MGI:109345
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) transcript_id : NM_009431.1

name	Eif4g2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110630013 GeneID:13690 MGI:109207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : eukaryotic translation initiation factor 4, gamma 2 transcript_id : NM_013507.3

name	Eif4g2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110630014 GeneID:13690 MGI:109207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : eukaryotic translation initiation factor 4, gamma 2 transcript_id : NM_001040131.1

name	LOC100043221 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149257732 GeneID:100043221
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043221 transcript_id : XM_001479276.1

name	LOC100042658 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149257663 GeneID:100042658
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to Ubtf protein transcript_id : XM_001478600.1

name	Galntl4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:32129254 GeneID:233733 MGI:2446239
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4 transcript_id : NM_173739.3

name	LOC100042678 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149257666 GeneID:100042678
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC100042678 transcript_id : XM_001478629.1

name	Usp47 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:48928013 GeneID:74996 MGI:1922246
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 47 transcript_id : NM_133758.2

name	Ipo7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:74229034 GeneID:233726 MGI:2152414
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005643 - nuclear pore [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0042393 - histone binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] [Evidence ISS]; GO:0008565 - protein transporter activity [Evidence IEA] GO_process : GO:0006606 - protein import into nucleus [Evidence IDA]; GO:0000059 - protein import into nucleus, docking [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : RAN binding protein 7 product : importin 7 protein_id : NP_852658.2

name	Zfp143 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:121247390 GeneID:20841 MGI:1277969
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : selenocysteine tRNA gene transcription activating factor; zinc finger protein 80, related sequence 1 product : zinc finger protein 143 protein_id : NP_033307.2

name	Wee1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543956 CCDS:CCDS21743.1 GeneID:22390 MGI:103075
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : wee 1 homolog protein_id : NP_033542.2

name	Swap70 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40789275 CCDS:CCDS21744.1 GeneID:20947 MGI:1298390
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IDA]; GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0045190 - isotype switching [Evidence IDA]; GO:0016444 - somatic cell DNA recombination [Evidence IDA] codon_start : 1 exception : mismatches in translation note : SWAP complex protein, 70 kDa product : SWA-70 protein protein_id : NP_033328.2

name	Sbf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149257662 GeneID:319934 MGI:1921831
definition	codon_start : 1 product : SET-binding factor 2 protein_id : XP_001478617.1

name	Adm (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6752988 CCDS:CCDS21745.1 GeneID:11535 MGI:108058
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005179 - hormone activity [Evidence IEA] GO_process : GO:0007507 - heart development [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IMP] codon_start : 1 product : adrenomedullin protein_id : NP_033757.1

name	Ampd3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:66792802 CCDS:CCDS21747.1 GeneID:11717 MGI:1096344
definition	GO_function : GO:0003876 - AMP deaminase activity [Evidence IEA]; GO:0019239 - deaminase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0009117 - nucleotide metabolism [Evidence IEA]; GO:0009168 - purine ribonucleoside monophosphate biosynthesis [Evidence IEA] codon_start : 1 product : AMP deaminase 3 protein_id : NP_033797.2

name	Rnf141 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84781808 GeneID:67150 MGI:1914400
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] codon_start : 1 product : ring finger protein 141 protein_id : NP_080275.2

name	Xlkd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560771 CCDS:CCDS21748.1 GeneID:114332 MGI:2136348
definition	GO_component : GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005540 - hyaluronic acid binding [Evidence IDA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IDA] GO_process : GO:0006027 - glycosaminoglycan catabolism [Evidence IDA] codon_start : 1 note : lymphatic vessel endothelial HA receptor-1; cell surface retention sequence binding protein-1; lymphatic vessel endothelial HA recptor-1 product : extra cellular link domain-containing 1 protein_id : NP_444477.2

name	Mrvi1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:120431612 CCDS:CCDS21749.1 GeneID:17540 MGI:1338023
definition	codon_start : 1 note : JAW1-related protein; retroviral integration site 1 product : MRV integration site 1 protein_id : NP_919446.2

name	Ctr9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678441 CCDS:CCDS21750.1 GeneID:22083 MGI:109345
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0042169 - SH2 domain binding [Evidence IDA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation note : TPR-containing, SH2-binding phosphoprotein product : SH2 domain binding protein 1 (tetratricopeptide repeat containing) protein_id : NP_033457.1

name	Eif4g2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110630015 GeneID:13690 MGI:109207
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016281 - eukaryotic translation initiation factor 4F complex [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0003723 - RNA binding [Evidence IEA]; GO:0003743 - translation initiation factor activity [Evidence IDA] [Evidence ISS] [Evidence IEA] GO_process : GO:0007050 - cell cycle arrest [Evidence ISS]; GO:0008219 - cell death [Evidence ISS]; GO:0045946 - positive regulation of translation [Evidence ISS]; GO:0006417 - regulation of protein biosynthesis [Evidence IEA]; GO:0006445 - regulation of translation [Evidence IEA]; GO:0006446 - regulation of translational initiation [Evidence IEA] [Evidence IDA] [Evidence ISS] codon_start : 1 exception : alternative start codon note : isoform 2 is encoded by transcript variant 2; apobec-1 target 1; translation repressor Nat1 product : eukaryotic translation initiation factor 4, gamma 2 isoform 2 protein_id : NP_001035221.1 transl_except : (pos:complement(118225059..118225061),aa:Met)

name	Eif4g2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34486094 GeneID:13690 MGI:109207
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016281 - eukaryotic translation initiation factor 4F complex [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0003723 - RNA binding [Evidence IEA]; GO:0003743 - translation initiation factor activity [Evidence IDA] [Evidence ISS] [Evidence IEA] GO_process : GO:0007050 - cell cycle arrest [Evidence ISS]; GO:0008219 - cell death [Evidence ISS]; GO:0045946 - positive regulation of translation [Evidence ISS]; GO:0006417 - regulation of protein biosynthesis [Evidence IEA]; GO:0006445 - regulation of translation [Evidence IEA]; GO:0006446 - regulation of translational initiation [Evidence IEA] [Evidence IDA] [Evidence ISS] codon_start : 1 exception : alternative start codon note : isoform 1 is encoded by transcript variant 1; apobec-1 target 1; translation repressor Nat1 product : eukaryotic translation initiation factor 4, gamma 2 isoform 1 protein_id : NP_038535.2 transl_except : (pos:complement(118225059..118225061),aa:Met)

name	LOC100043221 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149257733 GeneID:100043221
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479326.1

name	LOC100042658 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149257664 GeneID:100042658
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478650.1

name	Galntl4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982036 CCDS:CCDS21751.1 GeneID:233733 MGI:2446239
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004653 - polypeptide N-acetylgalactosaminyltransferase activity [Evidence IEA]; GO:0005529 - sugar binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] codon_start : 1 note : mpp-GalNAc-T18(O18) product : UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4 protein_id : NP_776100.2

name	LOC100042678 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149257667 GeneID:100042678
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478679.1

name	Usp47 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:48928014 GeneID:74996 MGI:1922246
definition	GO_function : GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : ubiquitin specific protease 47 protein_id : NP_598519.2

name	LOC668246 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668246
definition	number : 1 pseudo : _no_value

name	LOC668246 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668246
definition	number : 2 pseudo : _no_value

name	LOC384658 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:384658
definition	number : 1 pseudo : _no_value

name	AA474408 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149257659 GeneID:767812 MGI:3034216
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs product : expressed sequence AA474408 transcript_id : XR_035373.1

name	EG668368 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149257660 GeneID:668368 MGI:3648395
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 6 Proteins product : predicted gene, EG668368 pseudo : _no_value transcript_id : XR_002170.2

name	B430319F04Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149257731 GeneID:619306 MGI:3588258
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA B430319F04 gene transcript_id : XR_035423.1

name	LOC668399 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149257665 GeneID:668399
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 16 Proteins product : similar to Ac2-008 pseudo : _no_value transcript_id : XR_033793.1

clone name	MSMg01-371M20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-291K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136J21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-503O07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-060I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-152D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-154N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-154N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-165O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514F06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-206G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-192P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-107B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-127D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-168G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544P23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-197B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425E05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-171F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-217G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-178F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-011H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215A13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038I07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067A23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-236F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-026C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066F19
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-458D01.T7 (MSMg01no458_d01.b1)	MSMg01-458D01.TJ (MSMg01no458_d01.g1)
ACC	AG544078	AG544079
length	781	739
length of high quality (start - end)	---	538 (75 - 612)
definition	CHROMAT_FILE: MSMg01no458_d01.b1 PHD_FILE: MSMg01no458_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:42 2005	CHROMAT_FILE: MSMg01no458_d01.g1 PHD_FILE: MSMg01no458_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:42 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	AAAAAAAACACAAACGCAAAACACATACATTCAAAGCACGGCGCGTCGGC TTTACCTCCAACGGACAGCCGATCAGACATTTATGGGGGAGAATATTTTT GGGCTGGTTGGCTTGTGGCGGTAGAGTGGGGCTACAGGGGGGAGACCTGG CGCCGGCGAGTGTCAGCGCGACCCCCACCCGAGAAGTGTACAGCCTCCTG ATCCTCGGAGGAGAAAACAGGACTAGAGAGAGGGGAGCGAGGGCCGCTGC ACCGTTTCCCCTTGTAAACTGAAGATAGGGACAATGACAAGAAAGTACAC TATTACCATTGGCACATAGTCTTTGGTATCACTACCCCCTAAAGGTAAAG ACTGTGAAATGGTGAGAATGGGTAACAGACGAGAAAGACAATACAATTTT TTTTTCCCCCCCTCCACCAAAAAAGAAAAACTCAAGTAAGCATCCGATCT AGTGATCGAAAGGCAAATGTCAAACAGCAATACCGCAGCGCGATTAATCC CCCGTAAACCCAAAAAGACATGAGGATAGTTAAATTACCTTTATATAGCT GAACAAATATTCACGCGCAGGCAAACAAACTATCATAGACAACTCCTATC TCGGGCAGCGGTGATGAGGGAGGAGTTAGAGAGACGCGCACGTGGTATGA ACTGGGTTGAGGTACAACATGTTGCAACCACAGTCATCAACGACGACACC AACCGTGGAGCCAATGGCACCCAATGTTTCCACGTCATGCACCAATGTGC AGCCCATATTCTTCCCAATCCTGAGACAACG	GGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXTTTCGCAGAAATCACTGATTATGTCTATTTAAACTAGT CACAACGACATCACCAGTGTGACTTGCACAAACTGGCTGGGACAACACAA AACGACTGTAAAGCTGATAAAAGATTGAATTATCCCCCAAGAAGCTTAAG TGGCCGAAGAGGCAAGGCACCGCCCATAGAATTCGTCACCAGAGGCCCCG CCCATAGAGGCGTGGTTTCGCCTCACCACCACCACTCCCCGCTCCGGCGC GGGTCTGTGAGGAGCTCAGTTTTTATACCTTAGCGGCAGATGCCGCGTTC CCGAAGGCGCTCGGTCACCTACGGCTGACACAACAACAACCTCAGGACTA TCAGTCTTTCCAAAGAAGGACGCATCAGAGCCGCCAGGCGGGCGGAGCTC GCGTGGGACACGCCCTACTGGTAGTGCTTCCGGGACAGGGGGCGGGGCCT CCGGAAGTGGCCGGTCGCGGTCTGAAGCTCGTTGTTTCAGCGGCGGACAG CAGAGGAGAAGCTGGTCTCCGGCAGCTCCGCTGGGTGTGAGGTGTGGTAA CCTCTGTAAGGCTGGAAGCCGGTACTGCGATCTGCCTAGCGCCGGGGTGA GAAGCGCCTGCTTTCAGAGCTCACCATGTCGCGGGGCTCCATCGAGATTC CCCTCCGGGATACTGACTAGGTGGGTTGCTCAGTGTGCT
quality values	Open. Hide. 9 9 9 9 11 10 10 10 10 11 10 10 8 8 8 8 8 8 8 8 8 8 8 8 9 9 9 8 8 6 6 6 6 6 6 8 8 8 10 10 9 9 9 9 9 10 10 10 10 12 9 7 7 7 6 8 6 6 8 8 8 10 8 8 9 8 8 6 6 8 8 8 8 8 8 10 10 10 9 8 8 8 9 9 10 10 9 9 6 6 6 6 8 8 10 10 10 10 11 11 10 9 9 9 9 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 8 8 9 10 10 8 8 8 8 8 10 10 10 9 9 9 9 8 8 7 7 8 8 8 8 8 6 6 6 8 8 10 8 8 8 8 9 9 8 8 8 8 8 8 8 8 10 11 10 10 10 10 8 8 8 8 8 8 8 6 6 8 8 8 7 6 8 8 10 10 11 12 9 8 8 8 8 8 10 12 10 10 9 9 9 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 12 10 8 8 8 8 10 10 10 11 10 10 10 10 10 8 8 8 8 8 6 6 6 8 9 11 11 11 11 9 11 9 11 11 11 11 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 10 9 10 10 9 9 8 8 8 8 10 10 12 12 11 11 8 8 10 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 10 10 9 9 9 9 9 8 8 6 6 8 10 12 9 8 8 8 8 8 9 10 8 8 8 8 8 8 6 6 8 6 8 8 8 11 8 8 8 8 8 8 8 8 12 9 9 9 9 10 10 9 8 8 6 6 8 8 8 8 8 8 8 10 8 8 8 6 6 8 8 6 6 8 8 8 10 12 14 12 10 9 9 9 9 14 16 30 19 19 12 10 10 10 9 9 11 10 10 10 9 9 9 9 9 11 10 16 10 9 8 8 8 10 8 10 9 8 8 8 8 8 8 8 11 11 9 10 12 8 8 8 8 8 8 8 8 8 8 10 8 10 10 12 9 9 8 8 8 8 8 8 6 6 8 8 9 9 9 9 8 8 6 6 8 8 8 6 6 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 8 10 10 10 10 10 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 10 10 11 11 11 10 8 8 8 8 8 8 8 8 10 12 12 9 9 9 9 10 9 8 8 6 6 8 8 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 6 6 8 8 8 8 6 6 8 8 14 12 8 8 6 6 6 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 10 8 8 8 8 8 10 12 13 13 15 10 10 11 11 11 8 8 8 8 8 8 8 13 9 8 8 8 8 8 8 10 6 6 6 8 6 6 10 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 10 8 8 8 9 9 9 9 11 10 9 11 12 11 10 10 8 8 6 6 8 8 8 9 8 8 8 8 8 8 8 8 11 9 9 8 8 8 8 8 8 8 8 8 8 8 8 12 11 11 7 8 8 6 8 8 8 8 8 8 8 8 10 11 10 8 8 7 8 8 8 8 8 8 10 11 13 10 9 9 8 10 8 8 8 8 8 8 8 6 6 8 8 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 7 6 8 8 8 6	Open. Hide. 7 7 7 6 7 10 13 12 9 9 8 17 3 0 3 12 14 28 37 37 37 37 48 48 48 48 39 37 37 37 25 23 19 9 7 7 10 8 8 8 8 8 8 9 9 9 11 11 23 23 21 12 12 14 27 21 41 30 25 12 9 9 7 9 9 7 6 6 7 7 12 8 10 10 15 15 31 31 44 53 53 53 53 57 57 57 57 59 59 59 59 59 59 59 48 43 48 48 43 43 40 42 47 47 47 47 68 68 50 50 50 50 50 47 48 48 57 48 48 47 57 57 46 44 44 39 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 57 50 50 50 50 50 68 68 68 68 57 57 57 57 57 57 57 57 57 57 59 57 57 57 59 59 59 68 68 59 59 59 57 57 57 57 57 68 68 68 68 68 68 59 59 57 57 57 57 57 57 57 54 57 57 59 59 57 57 50 50 50 47 43 57 57 59 57 59 54 59 59 59 48 48 48 59 57 47 42 35 42 32 32 24 33 42 44 57 68 68 68 68 68 59 59 59 57 57 57 57 57 54 54 59 59 59 59 59 59 59 59 59 59 57 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 43 47 59 57 57 57 57 57 50 59 59 59 34 34 23 23 16 27 8 8 8 8 8 9 13 25 25 41 43 50 59 59 59 59 57 57 57 57 57 48 48 48 59 59 59 48 59 59 59 57 57 57 68 48 48 42 47 43 47 43 43 43 43 46 46 54 54 57 57 57 54 54 54 57 57 68 68 68 59 59 57 57 48 48 48 48 57 57 47 43 37 48 48 57 57 57 57 59 57 47 47 47 47 57 59 57 57 54 50 57 57 59 59 59 57 57 57 50 52 52 52 38 41 20 38 38 38 28 42 38 59 59 59 59 59 59 59 59 52 52 44 44 52 43 43 52 52 52 52 43 44 44 52 54 54 57 50 57 52 52 47 50 57 57 57 59 54 54 57 57 54 54 59 44 44 47 44 36 36 38 40 57 57 57 57 57 57 57 57 59 59 43 43 43 46 44 59 46 44 43 46 44 57 57 57 57 57 54 54 46 47 43 43 43 47 43 43 43 59 59 59 59 59 59 59 42 42 43 43 43 48 42 43 34 34 25 34 37 47 57 59 43 43 43 43 43 34 34 28 28 31 28 28 31 31 25 32 37 37 39 39 46 46 59 48 48 47 47 59 59 43 39 39 35 32 31 23 18 19 27 25 48 39 41 37 41 39 47 39 37 37 35 15 15 17 17 18 19 37 37 34 34 28 28 34 22 14 12 12 15 19 19 21 30 14 14 21 16 11 11 11 23 22 30 25 21 21 24 22 28 16 16 13 13 14 17 16 10 10 10 12 16 11 10 10 10 13 16 16 16 10 10 9 9 9 12 13 14 25 28 23 21 11 12 12 24 24 11 13 8 8 8 19 23 25 21 21 14 14 13 15 19 20 11 10 9 9 9 9 9 16 16 19 10 8 8 9 9 17 16 13 11 9 10 9 9 9 10 10 12 10 12 12 12 12 11 10 10 10 10 10 12 9 9 9 9 9 9 12 12 12 18 12 11 11 11

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no458_d01.g1 MSMg01no458_d01.g1 CHROMAT_FILE:
MSMg01no458_d01.g1 PHD_FILE: MSMg01no458_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:42 2005
         (538 letters)



>mm_chr7_118171850_118172787
          Length = 938

 Score = 1017 bits (526), Expect = 0.0
 Identities = 535/538 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgattatgtctatttaaactagtcacaacgacatcaccagtgtgacttgcacaaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactgattatgtctatttaaactagtcacaacgacatcaccagtgtgacttgcacaaact 260

                                                                       
Query: 61  ggctgggacaacacaaaacgactgtaaagctgataaaagattgaattatcccccaagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctgggacaacacaaaacgactgtaaagctgataaaagattgaattatcccccaagaag 320

                                                                       
Query: 121 cttaagtggccgaagaggcaaggcaccgcccatagaattcgtcaccagaggccccgccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttaagtggccgaagaggcaaggcaccgcccatagaattcgtcaccagaggccccgccca 380

                                                                       
Query: 181 tagaggcgtggtttcgcctcaccaccaccactccccgctccggcgcgggtctgtgaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaggcgtggtttcgcctcaccaccaccactccccgctccggcgcgggtctgtgaggag 440

                                                                       
Query: 241 ctcagtttttataccttagcggcagatgccgcgttcccgaaggcgctcggtcacctacgg 300
           ||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcagtttggacaccttagcggcagatgccgcgttcccgaaggcgctcggtcacctacgg 500

                                                                       
Query: 301 ctgacacaacaacaacctcaggactatcagtctttccaaagaaggacgcatcagagccgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgacacaacaacaacctcaggactatcagtctttccaaagaaggacgcatcagagccgc 560

                                                                       
Query: 361 caggcgggcggagctcgcgtgggacacgccctactggtagtgcttccgggacagggggcg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggcgggcggagctcgcgtgggacacgccctactggtagtgcttccgggacagggggcg 620

                                                                       
Query: 421 gggcctccggaagtggccggtcgcggtctgaagctcgttgtttcagcggcggacagcaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggcctccggaagtggccggtcgcggtctgaagctcgttgtttcagcggcggacagcaga 680

                                                                     
Query: 481 ggagaagctggtctccggcagctccgctgggtgtgaggtgtggtaacctctgtaaggc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggagaagctggtctccggcagctccgctgggtgtgaggtgtggtaacctctgtaaggc 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information