BAC Information

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BAC

Clone NameMSMg01-458E07
Chromosome7 (Build37)
Map Location 82,701,355 - 82,738,051
singlet/doubletdoublet
Overlap geneAkap13
Upstream geneEG665641, 0610006L08Rik, Sv2b, 1500012K07Rik, LOC100042171
Downstream geneKlhl25, LOC100042210, LOC434200, EG244071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458E07.T7 (MSMg01no458_e07.b1)MSMg01-458E07.TJ (MSMg01no458_e07.g1)
ACCAG544138AG544139
length748745
length of high quality
(start - end)		636 (50 - 685)650 (77 - 726)
definitionCHROMAT_FILE: MSMg01no458_e07.b1 PHD_FILE: MSMg01no458_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:48 2005CHROMAT_FILE: MSMg01no458_e07.g1 PHD_FILE: MSMg01no458_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,737,474 - 82,738,051)(82,701,355 - 82,702,004)
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATATAGAAATTCTTCAAGCTGTTAATGAGAAAAAACACTGCAAAC
TAGATCTCAGACAAGATGAATGGAGCCAGGCCAGCATAACGCCAAGGTGC
TCCAGATCGCTCTCCCTGGCTATTATTTTATAGCTACATTTGCATATATA
TTTTATCCTTTCACCTCTTAAGCAAAAGCGAAGGCTCCAAACTTGTTTTG
TAACAGATAAGCTATTGTGATTCACTTACCAAGTCCTTAAGAGGACACTG
AAAAAGCAATCACAGTGTTGACAACACATCTTGAACAACAGTCCTGTGTT
CTACTGTGAGATGTGCAGTCAAGTTTCATGTGAGAGTCTTGAAAGCAGGA
TTCAAAAACTCACAAACATACCGGCCCTGAGAATTATTTATACTTCTGAC
TACACTAAACCGTGACGGAGTGCCCATTACTTAGAAGGCTGGGTCTGTGT
CCTGCACATTTACAAATCTGGAGAATTGAGGCTAAGCTTTGTTACTTTAT
GGGACCGTGACAACAGGCAAGAGACTTCATTTCCTTTGCCTCAGTTTCTA
CAACTATAAGAAAGAGATAATAGCATTTATTCTATCCACTCATTGGGCTT
TTATGAGACTCGAAATCTAAGGGAATAGTTTAAGTGTAACCAATTGTACT
TTAAATATCCCCATGAGTATTANNACTGTAAAGTTATTACAGTGAGGN

NGGCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGTTGATTTCTGTTTATGTTG
TTTGAGGTGCTTTTAAGTAAAGCTGAGGGCTTTGCTTGCTAGTTGGGAGT
GGGCTGTACCCAAGGCTCTTGGAATGTGTCTGAGCACTTTCTCTTTAAGA
GAGTTGGTACTAAGGACAGGGGAGATCCTATTATGTCTTCTTATCAGGAG
TGTTTCTGAGTCTTGGTTCTTTTTAACTGTCATTTTATGGACGTGAGCTG
AAATCTTTTCATCCTCATATTTTTATATTTTAGATCTTTTGATTTTTTTC
ATCCAGTTATCTAACCTAAGATAAATTGGGGAGAGAGATTTGCAGAGTAG
AGTTAGGCATTCTTTTATCCAGCCAACATTATTGAGCACTTACAATCACG
CTTAGGCACTGATACTGCATTGAATAAAACAAGTATGCCCTTAACTCAGA
TAAATATGCTGTCTAAAATTCTGTACATCAGTATACTGTATATATGTTAA
AATCATGAGTCATATCATTACAGGAGAGGTAAAGCAGGACAAGGCAGGTG
AGAGGCGGGGTGGGAAAGCTCTTACTCATCCCCACACTCTTGAAGGATGG
TGATCATTAGCGTGCACGATGAACATATGTGACCTTTTCCAGCGATGTGT
AGACTTGCATGCNGCAGGAGATGTAGCCTTTCCATGGCCACCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_e07.b1 MSMg01no458_e07.b1 CHROMAT_FILE:
MSMg01no458_e07.b1 PHD_FILE: MSMg01no458_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:48 2005
         (636 letters)



>mm_chr7_82737389_82738424
          Length = 1036

 Score = 1110 bits (574), Expect = 0.0
 Identities = 577/578 (99%)
 Strand = Plus / Minus

                                                                       
Query: 59  cagacaagatgaatggagccaggccagcataacgccaaggtgctccagatcgctctccct 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 cagacaagatgaatggagccaggccagcataacgccaaggtgctccagatcgctctccct 604

                                                                       
Query: 119 ggctattattttatagctacatttgcatatatattttatcctttcacctcttaagcaaaa 178
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ggctattattttatagccacatttgcatatatattttatcctttcacctcttaagcaaaa 544

                                                                       
Query: 179 gcgaaggctccaaacttgttttgtaacagataagctattgtgattcacttaccaagtcct 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gcgaaggctccaaacttgttttgtaacagataagctattgtgattcacttaccaagtcct 484

                                                                       
Query: 239 taagaggacactgaaaaagcaatcacagtgttgacaacacatcttgaacaacagtcctgt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 taagaggacactgaaaaagcaatcacagtgttgacaacacatcttgaacaacagtcctgt 424

                                                                       
Query: 299 gttctactgtgagatgtgcagtcaagtttcatgtgagagtcttgaaagcaggattcaaaa 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gttctactgtgagatgtgcagtcaagtttcatgtgagagtcttgaaagcaggattcaaaa 364

                                                                       
Query: 359 actcacaaacataccggccctgagaattatttatacttctgactacactaaaccgtgacg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 actcacaaacataccggccctgagaattatttatacttctgactacactaaaccgtgacg 304

                                                                       
Query: 419 gagtgcccattacttagaaggctgggtctgtgtcctgcacatttacaaatctggagaatt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gagtgcccattacttagaaggctgggtctgtgtcctgcacatttacaaatctggagaatt 244

                                                                       
Query: 479 gaggctaagctttgttactttatgggaccgtgacaacaggcaagagacttcatttccttt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gaggctaagctttgttactttatgggaccgtgacaacaggcaagagacttcatttccttt 184

                                                                       
Query: 539 gcctcagtttctacaactataagaaagagataatagcatttattctatccactcattggg 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gcctcagtttctacaactataagaaagagataatagcatttattctatccactcattggg 124

                                                 
Query: 599 cttttatgagactcgaaatctaagggaatagtttaagt 636
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cttttatgagactcgaaatctaagggaatagtttaagt 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no458_e07.g1 MSMg01no458_e07.g1 CHROMAT_FILE:
MSMg01no458_e07.g1 PHD_FILE: MSMg01no458_e07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:48 2005
         (650 letters)



>mm_chr7_82701155_82702204
          Length = 1050

 Score = 1212 bits (627), Expect = 0.0
 Identities = 644/650 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcagttgatttctgtttatgttgtttgaggtgcttttaagtaaagctgagggctttgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcagttgatttctgtttatgttgtttgaggtgcttttaagtaaagctgagggctttgct 260

                                                                       
Query: 61  tgctagttgggagtgggctgtacccaaggctcttggaatgtgtctgagcactttctcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctagttgggagtgggctgtacccaaggctcttggaatgtgtctgagcactttctcttt 320

                                                                       
Query: 121 aagagagttggtactaaggacaggggagatcctattatgtcttcttatcaggagtgtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagagttggtactaaggacaggggagatcctattatgtcttcttatcaggagtgtttc 380

                                                                       
Query: 181 tgagtcttggttctttttaactgtcattttatggacgtgagctgaaatcttttcatcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagtcttggttctttttaactgtcattttatggacgtgagctgaaatcttttcatcctc 440

                                                                       
Query: 241 atatttttatattttagatcttttgatttttttcatccagttatctaacctaagataaat 300
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagcattatattttagatcttttgatttttttcatccagttatctaacctaagataaat 500

                                                                       
Query: 301 tggggagagagatttgcagagtagagttaggcattcttttatccagccaacattattgag 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 tggggagagagatttgcagagtagagttaggcattcatttatccagccaacattattgag 560

                                                                       
Query: 361 cacttacaatcacgcttaggcactgatactgcattgaataaaacaagtatgcccttaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacttacaatcacgcttaggcactgatactgcattgaataaaacaagtatgcccttaact 620

                                                                       
Query: 421 cagataaatatgctgtctaaaattctgtacatcagtatactgtatatatgttaaaatcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagataaatatgctgtctaaaattctgtacatcagtatactgtatatatgttaaaatcat 680

                                                                       
Query: 481 gagtcatatcattacaggagaggtaaagcaggacaaggcaggtgagaggcggggtgggaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagtcatatcattacaggagaggtaaagcaggacaaggcaggtgagaggcggggtgggaa 740

                                                                       
Query: 541 agctcttactcatccccacactcttgaaggatggtgatcattagcgtgcacgatgaacat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agctcttactcatccccacactcttgaaggatggtgatcattagcgtgcacgatgaacat 800

                                                             
Query: 601 atgtgaccttttccagcgatgtgtagacttgcatgcngcaggagatgtag 650
           |||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 801 atgtgaccttttccagcgatgtgtagacttgcatggggcaggagatgtag 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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