Query= MSMg01no458_m22.b1 MSMg01no458_m22.b1 CHROMAT_FILE:
MSMg01no458_m22.b1 PHD_FILE: MSMg01no458_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:30 2005
(486 letters)
>mm_chr7_117234539_117235424
Length = 886
Score = 845 bits (437), Expect = 0.0
Identities = 471/485 (97%), Gaps = 8/485 (1%)
Strand = Plus / Plus
Query: 6 ggaattctcacacattt---cacccctcagtttttttgagagtttttgttatttcgagac 62
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 206 ggaattctcacacat--acacacccctcagtttttttgag--tttttgttatttcgagac 261
Query: 63 agtagtggttggcat-tcagatgcagatttgaggtgatagaatgatagaagataggcaga 121
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agtagtggttggcatgtcagatgcagatttgaggtgatagaatgatagaagataggcaga 321
Query: 122 gaagttgaaaggtgaggtacacacaggaaatctagaacatggggaacagagatttgagca 181
||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 322 gaagttgaaaggtaaggtgcacacaggaaatctggaacatggggaacagagatttgagca 381
Query: 182 gagtgtcaaggtagagatggctagggaaggaagagttaggcccaagactcgtgaaggtaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gagtgtcaaggtagagatggctagggaaggaagagttaggcccaagactcgtgaaggtaa 441
Query: 242 gaggcagaagttgggggtaggggctgacaactgtaaccccagttagcaggaaactgaggc 301
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 442 gaggcagaagttgggggtaggggctgacaactgtaaccccagtaagcaggaaactgaggc 501
Query: 302 aggaggattactgaaatattccaggccagtatgggaaacagaaagaccctgtctaaatca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aggaggattactgaaatattccaggccagtatgggaaacagaaagaccctgtctaaatca 561
Query: 362 caaacacaaaacccaaccagacatagacttgtctgatgaatggaaaattatattccattg 421
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 562 caaacacaaaacccaaccagacatagacttgtctgatgaatggaagattatattccattg 621
Query: 422 caaagttttatttgctctcacaaaggaagcttatttgagggttaggctctgtccttagtt 481
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 caaagttttatttgctcccacaaaggaagcttatttgagggttaggctctgtccttagtt 681
Query: 482 aagat 486
|||||
Sbjct: 682 aagat 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_m22.g1 MSMg01no458_m22.g1 CHROMAT_FILE:
MSMg01no458_m22.g1 PHD_FILE: MSMg01no458_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:30 2005
(346 letters)
>mm_chr7_117368399_117369144
Length = 746
Score = 619 bits (320), Expect = 0.0
Identities = 329/332 (99%), Gaps = 1/332 (0%)
Strand = Plus / Minus
Query: 1 caggacagccagggctacacaaagaaaccctctttcaggag-aaaaaaaaaagataaaca 59
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 466 caggacagccagggctacacaaagaaaccctctttcaggagaaaaaaaaaaagataaaca 407
Query: 60 aaacatggtttccatctacagtctgagcacctgaaagggagagacaggaagatggctgta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aaacatggtttccatctacagtctgagcacctgaaagggagagacaggaagatggctgta 347
Query: 120 agtttaaagcctacctaatctactacacagcaagttctagcccattgagagatatacaga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agtttaaagcctacctaatctactacacagcaagttctagcccattgagagatatacaga 287
Query: 180 aagattctgtctgaaaaataaaatatatacattataaatggaagtatagctcagtgataa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aagattctgtctgaaaaataaaatatatacattataaatggaagtatagctcagtgataa 227
Query: 240 agagcttgcttataatgtagtaagtcctgggctcaattttcagtactacaaaagtaggag 299
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 226 agagcttgcttagaatgtagtaagccctgggctcaattttcagtactacaaaagtaggag 167
Query: 300 cagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 331
||||||||||||||||||||||||||||||||
Sbjct: 166 cagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 135
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space: 248369
Effective search space used: 248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
