BAC Information

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BAC

Clone NameMSMg01-458O02
Chromosome7 (Build37)
Map Location 129,636,611 - 129,636,784
singlet/doubletsinglet
Overlap genePrkcb1
Upstream geneHs3st2, Usp31, Scnn1g, Scnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, LOC668486
Downstream geneCacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458O02.T7 (MSMg01no458_o02.b1)MSMg01-458O02.TJ (MSMg01no458_o02.g1)
ACCAG544606AG544607
length738742
length of high quality
(start - end)
175 (347 - 521)348 (257 - 604)
definitionCHROMAT_FILE: MSMg01no458_o02.b1 PHD_FILE: MSMg01no458_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:36 2005CHROMAT_FILE: MSMg01no458_o02.g1 PHD_FILE: MSMg01no458_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGCGATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATACAGAGG
CGCGGAATTCACTTAGTTAACACAAAGACCCGGNGAGATAACATTCTTAT
TATAAAGCCCCTTCTTTTGGAGAAGGGCCCTGAGACACTGAGACAGAACG
TGACTTGGGGCACACAGCCACTGAATGACAACGAGTCTCTTGAAGCCCAG
GCTCTCTGGCTTCGGTGTCTCCACACCTCACCACCACATTTTAAGAATTT
GGTATGGTTTGTGGCTTGAGATCAGACAAGACTGCTTGAAATGCAGGAGA
CACGGCACAGGAGGACAGTTTACTTCATCCTCCGAGGCCTAGGGCAAAGG
AAGCAGATGGTCTCAGATCAGCCTGTTTTCAAATCAGCCAGGACACTGAC
TTTTCTAAACCAGCTGGACCTCCCAGGGAGACGTGGAACAAGTGTGGCTG
TGAGGAGCAAGGACAGTGGGGGTAAGGAACACCTCCGCACATGAACACAC
TTAAACATGTGCGCATAGACCGCAAGTGCCTCCCTTGTCACGGTCATTAA
CAGAAAGGATCATGACACCTGCAAATTCTCTTGCACATTATGATCTTCTC
TGTCTCCTAAGGATGCTCTTAGGGATGTGTGGTTCCTGCCCATTTGATTG
GACCTTCTTCATGTTTTCCGTTCCTCACTGCGCTGGTCCATTGAGGCACC
ATGGTTCATACAGCTTGTATATGTAATGGGCTCAGCGC
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCGCGAAATTCAACCTATGCAGACATGGAGAGCTGAC
TGAGAAATGTCCTCAAGGGCACTTGAGGGCACTTTACAGAAGACACTCTA
ATGAAACAGAACTCTTCGGGATGGGCAAATAATCCAAGATTAGGTCAACA
TGTTGCAGGGAGTTAGACTAATGGTGAAAGCCTCACTCTGCAATGGGCTT
GATGGAAAGAAAGAGCAAGATGCCAATCATGATTTGGATCCTGTTTCTAT
AGTTGAAATAAAATTTGATTTTTTTTAAAAAATTAATTCCTTAAAGAGAA
AAGGTTTATAATACAACTCTGATCAATAAAATGTAATTAAAAGATGCTGT
ATGGAAATAGCCAGAGGGTGAGAACAATGTGTGTATTTATCTGCTGATGA
ATAGATAACCACAATGTGGCACACACATACAGAAGAATAATATTCAACCA
TGAAGAGGTATGAAGTTCAGCACATGTTATCTATGCTATATATATGAACA
AACCTTGATGATGCCATTATGCTGACACAAAAGACTGCTTATTTGAGCCT
CCTATAACAGGCAAACATAGAGAGGCAGGGCATTGAATTCACAGGGCTGA
AGAGCAAGGCAAACAGGAAGCTTTTTTCCACCACTATAAAACTTTTGCTA
GAATTACTAAAAATAGCTCAGTATAAGTGGTAAAGATTGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_o02.b1 MSMg01no458_o02.b1 CHROMAT_FILE:
MSMg01no458_o02.b1 PHD_FILE: MSMg01no458_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:36 2005
         (175 letters)



>mm_chr7_129636411_129636985
          Length = 575

 Score =  321 bits (166), Expect = 1e-92
 Identities = 172/174 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggaagcagatggtctcagatcagcctgttttcaaatcagccaggacactgacttttct 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggaagcagatggtctcagaacagcctgttttcaaatcagccaggacactgacttttct 260

                                                                       
Query: 61  aaaccagctggacctcccagggagacgtggaacaagtgtggctgtgaggagcaaggacag 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaccagctgggcctcccagggagacgtggaacaagtgtggctgtgaggagcaaggacag 320

                                                                 
Query: 121 tgggggtaaggaacacctccgcacatgaacacacttaaacatgtgcgcatagac 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggggtaaggaacacctccgcacatgaacacacttaaacatgtgcgcatagac 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)