BAC Information

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BAC

Clone NameMSMg01-459A18
Chromosome7 (Build37)
Map Location 98,707,955 - 98,878,972
singlet/doubletdoublet
Overlap geneDlg2
Upstream geneLOC666689, LOC621816, LOC100039943
Downstream geneCcdc90b, Ankrd42, Pcf11, LOC676240, LOC100040007
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459A18.T7 (MSMg01no459_a18.b1)MSMg01-459A18.TJ (MSMg01no459_a18.g1)
ACCAG544734AG544735
length776785
length of high quality
(start - end)		459 (41 - 499)387 (74 - 460)
definitionCHROMAT_FILE: MSMg01no459_a18.b1 PHD_FILE: MSMg01no459_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:48 2005CHROMAT_FILE: MSMg01no459_a18.g1 PHD_FILE: MSMg01no459_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,878,518 - 98,878,972)(98,707,955 - 98,708,341)
sequence
GTCCTCATGTCACTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCCATATGGATTGTATATACAGAAGAAAAGAAGAATGTTATTATGATTGT
TATTAATTGTGTAGGGCTGAGTATCAAAACAATGGCTTTGCCCCTTGATA
TGCTGTCTACCTTTAGTCTATATCCTCGGGCCTTAGGAATTACAGACTAA
ATGTAACTATAAAGTTCAGATGAGGACTCAATGAAGGCGATATATATCTT
TATAAACTTGATCAAACATTTCCCAAGTACTTATATCTGAGTTACTCATA
TATGTAATTTGTTCTTTCTGGCTTCTATTTCCCTGTTGACTATTGCAAGG
GTCAGAAGTCAAGCCTAGATGGATCTGGTTGGATTTCTGAGTATTAAAAA
TAGGTTCTCTTGTTGCTTTGGTGGTTCTTCAGAAGTTTCCTCTCCAGACT
GTCCCATATATACATTCTGGTTTCATAGTATATATAGTTAATTGAACCCG
TCAATCAAACTGGTGACTCAAACTCCAGCCTTCCTTTTCCATATGCTTAT
TTCCATTAACTGGAAAGAGACACTGAACAAATTTGGAGAAAGAAAATTAT
TTCTTTTTCTTCCAAGGTTTTAGGTTGCGGTTTTTGTATATCCCGAAGGT
ATTGGAAATTTTTAGGAATAAGAAAAGCCCCCTTTCTTGGTGGACCATAC
TTAAAGGGAAGGGGGTTTCCTTTACCTCTCCCCTTTCCCCTGGGGAAAGC
GAAACCAACCCCCTTGGTGACATACC

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAGATGAAGGTCCCAGAAAATTTAGT
ACCTGGCATGGTTCTGCTTCCTGGCTCATAGCCCGCTGTTTACCAAGGTA
ACTTTATACAGTAGAGGGAGAAGAGCAATCTCTAGGATCTGTATTTTAAA
GGCCATGATATCATTCATAATGATACTGCTGTTAGACCCTAGTCATAACC
AAAGACCACTGCGTTGGAGATTAGACTTGAGCATATCAATTCTGGGAAGG
TCCACTTCTTGCCTTTAGAAGGGACCAGCATTGCTCTGTATTGACAAAAT
GAAACAAAAGAGGTAGATGAGATTGTATTCACAGTTTAGAAGTACTCTGA
TGTGTTTTTGTCTGGATTATCTGTCTCTGCCTTAGGGGTTTGATTCTTTT
GGAGGATGCTACCTGAATTANAACAAATTAGCTGCTTTCTACCACCCAAA
TATGGCAAACTGAGCCTCAGAAATGACCTTGTTTTCTATTCAGCTCCCAG
AAAAAAGATACTGGTTTTCTAAAAGGCCTGGTTTCTACCCAATGTTTTTG
TCCCATAAAAGTTTTGTACACTCCCCTTTGGTGTTCCTAAATTCCGGCCC
TAGACAAATATCCACTTTCTCTTTCAAACACTTTGTTCCGTGGCTCTTCT
CCGCGCCGCCACACACATTTTTTTCTTTCCCGCTTTATCTCCTCCCCTCC
TTTCTTCTTATTTTCCTCCCTTTTTTCCTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_a18.b1 MSMg01no459_a18.b1 CHROMAT_FILE:
MSMg01no459_a18.b1 PHD_FILE: MSMg01no459_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:48 2005
         (459 letters)



>mm_chr7_98878314_98879172
          Length = 859

 Score =  857 bits (443), Expect = 0.0
 Identities = 452/455 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccatatggattgtatatacagaagaaaagaagaatgttattatgattgttatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gaattctccatatggattgtatatacagaagaaaagaagaatgttattatgattgttatt 600

                                                                       
Query: 65  aattgtgtagggctgagtatcaaaacaatggctttgccccttgatatgctgtctaccttt 124
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 599 aattgtgtagggctgagtatcaaaacaatggctttgcccattgatatgctgtctaccttt 540

                                                                       
Query: 125 agtctatatcctcgggccttaggaattacagactaaatgtaactataaagttcagatgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agtctatatcctcgggccttaggaattacagactaaatgtaactataaagttcagatgag 480

                                                                       
Query: 185 gactcaatgaaggcgatatatatctttataaacttgatcaaacatttcccaagtacttat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gactcaatgaaggcgatatatatctttataaacttgatcaaacatttcccaagtacttat 420

                                                                       
Query: 245 atctgagttactcatatatgtaatttgttctttctggcttctatttccctgttgactatt 304
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 atctgagttactcatatatataatttgttctttctggcttctatttccctgttgactatt 360

                                                                       
Query: 305 gcaagggtcagaagtcaagcctagatggatctggttggatttctgagtattaaaaatagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gcaagggtcagaagtcaagcctagatggatctggttggatttctgagtattaaaaatagg 300

                                                                       
Query: 365 ttctcttgttgctttggtggttcttcagaagtttcctctccagactgtcccatatataca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ttctcttgttgctttggtggttcttcagaagtttcctctccagactgtcccatatataca 240

                                              
Query: 425 ttctggtttcatagtatatatagttaattgaaccc 459
           |||||||||||||||| ||||||||||||||||||
Sbjct: 239 ttctggtttcatagtagatatagttaattgaaccc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no459_a18.g1 MSMg01no459_a18.g1 CHROMAT_FILE:
MSMg01no459_a18.g1 PHD_FILE: MSMg01no459_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:48 2005
         (387 letters)



>mm_chr7_98707755_98708541
          Length = 787

 Score =  710 bits (367), Expect = 0.0
 Identities = 382/387 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagatgaaggtcccagaaaatttagtacctggcatggttctgcttcctggctcatagcc 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaggtgaaggtcccagaaaatttagtacctggcatggttctgcttcctggctcatagcc 260

                                                                       
Query: 61  cgctgtttaccaaggtaactttatacagtagagggagaagagcaatctctaggatctgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgctgtttaccaaggtaactttatacagtagagggagaagagcaatctctaggatctgta 320

                                                                       
Query: 121 ttttaaaggccatgatatcattcataatgatactgctgttagaccctagtcataaccaaa 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattaaaggccatgatatcattcataatgatactgctgttagaccctagtcataaccaaa 380

                                                                       
Query: 181 gaccactgcgttggagattagacttgagcatatcaattctgggaaggtccacttcttgcc 240
           |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 381 gaccactgcgttggagattagacttgagaatatcaattctgggaaggcccacttcttgcc 440

                                                                       
Query: 241 tttagaagggaccagcattgctctgtattgacaaaatgaaacaaaagaggtagatgagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttagaagggaccagcattgctctgtattgacaaaatgaaacaaaagaggtagatgagat 500

                                                                       
Query: 301 tgtattcacagtttagaagtactctgatgtgtttttgtctggattatctgtctctgcctt 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtattcacagcttagaagtactctgatgtgtttttgtctggattatctgtctctgcctt 560

                                      
Query: 361 aggggtttgattcttttggaggatgct 387
           |||||||||||||||||||||||||||
Sbjct: 561 aggggtttgattcttttggaggatgct 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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