BAC Information

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BAC

Clone NameMSMg01-459C06
Chromosome7 (Build37)
Map Location 116,048,635 - 116,049,068
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519
Downstream geneNlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459C06.T7 (MSMg01no459_c06.b1)MSMg01-459C06.TJ (MSMg01no459_c06.g1)
ACCAG544805AG544806
length748819
length of high quality
(start - end)
504 (47 - 550)164 (70 - 233)
definitionCHROMAT_FILE: MSMg01no459_c06.b1 PHD_FILE: MSMg01no459_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:56 2005CHROMAT_FILE: MSMg01no459_c06.g1 PHD_FILE: MSMg01no459_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGGTTATCGTGGTCATTTTACTTAAGCCTTCCAAATAGTTGAA
TGTTGCTGTACCCAGTGTTCTAATTGTGATTTTAATTTGGACCTTTCCTA
TAAATAGTATTATTGAGTCTCTACATAGTTTAACAGGTTTTTTAAAATAT
CATTTATTGTGAGTTTACTGTTAAAATTAAAAGATCTATTTAAAGATGTT
ATTGATACTACCCTTCATGGAAAAATATTTAAAACCCTCAATAAAGATAT
TTTTTTGAAGCAAATTATTAACAACAGTGCAAAAAAATCATGACTGAGTA
GAATTTTTTCAAGGTATGGCTTTTTCAAGGCTGGACCAATATTCAGAGAT
CAATCAATACTATCGGTCACACCCACAGACTGAAGAAGAAAAATTACAAG
ATCATATTATCAAATGCAGAAAGAATACTATGAACCACCATCATTCACAA
TAAAAACTTGGAGCAGCTGGAGCTCAGGGGAATGTCACGTGTATAACACG
TCACGCGTATTGCATTTATGAAGCCCTGGCTTAGGTCCAACTCACCCTGT
GGGCTAAAACAAACTTAATACTCCCAGCAGATTATGAATAGAGGAAACCC
CCCACTTTGATGATAATGTCCAAAAACTTTTTGGTGGTTTGGCTGAACCC
CACGGGCCCGGTAATTGGCAATGTCGGCTTCCCACTTTTGTTAAGAAA
CAATGCATTTGGAGGCCTGGNGGCCGCCTGTTCTAACCAATTTAGGTGAA
CTATAGAATTTTCCGAGGAATTCAGTACTCATTCATGTGCAAGCAAAAAA
ATAAATAAATAAACCTTTTCTATCCAAGGTTGAAAACAATACAAACTTCT
TCCCTGTGTTCAGGATTCCTGCTGCAAGGAACTTCTGGTATGCATGCCTG
TGATAATTTGTGACATTCTATGTCAGGTACNAATCATCGTGTAAAACTCT
TGTGCTGTAATGAGCAGGTTCATGAATTTCAAAGAACCAAGAGAAACAAA
CCAAAACACTTTCCCAGAAGATTTTTTTTTTGTAAGTCCTGACCCACCAA
ATTTGAAAAAAGAAGTAAAATTTTTTACTAAAACGAATTTCCACGGACCT
TTTTTATTAAAAAAAACCCCCTCGATCACTTTTATTATTAAATAAAAAAA
TCTCTTACAAAATAACTTTTCCTTATAAAATCTAAAACCCCCCTTCCTCC
CCCCNNTNNNNNNNAAGACAAAAATTTTTTCCGCATCTTTGCTCTTTACA
AAAAAAAGTTGGTATAAAACACCTATCCCCCATCTTCTCCTTAACTACAT
TTTTTTTAAAACAATTTCTATAAATGACAACCCCAACACCAATACTCCCC
TCCTACCCAATTCCGTTGCTCTCTCATTCCCCCTTCCCATTTCTTCATCT
TTTTTGTGTCTTTCTCTATTCCCCCCCTCTAAACTACCTCTTTACCTATA
TCCTTACTCTTTTCCTCCCTTTCCCTTCCTTTCTCTTTTTATTTTCCCCC
CTCTTTTCTCCTCTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_c06.b1 MSMg01no459_c06.b1 CHROMAT_FILE:
MSMg01no459_c06.b1 PHD_FILE: MSMg01no459_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:56 2005
         (504 letters)



>mm_chr7_116048635_116049538
          Length = 904

 Score =  793 bits (410), Expect = 0.0
 Identities = 428/434 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctggttatcgtggtcattttacttaagccttccaaatagttgaatgttgctgta 64
           ||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gaattcctgggcatagtggtcattttacttaagccttccaaatagttgaatgttgctgta 375

                                                                       
Query: 65  cccagtgttctaattgtgattttaatttggacctttcctataaatagtattattgagtct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cccagtgttctaattgtgattttaatttggacctttcctataaatagtattattgagtct 315

                                                                       
Query: 125 ctacatagtttaacaggttttttaaaatatcatttattgtgagtttactgttaaaattaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctacatagtttaacaggttttttaaaatatcatttattgtgagtttactgttaaaattaa 255

                                                                       
Query: 185 aagatctatttaaagatgttattgatactacccttcatggaaaaatatttaaaaccctca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aagatctatttaaagatgttattgatactacccttcatggaaaaatatttaaaaccctca 195

                                                                       
Query: 245 ataaagatatttttttgaagcaaattattaacaacagtgcaaaaaaatcatgactgagta 304
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 194 ataaagatatttttttgaagcaaattaaaaacaacagtgcaaaaaaatcatgactgagta 135

                                                                       
Query: 305 gaattttttcaaggtatggctttttcaaggctggaccaatattcagagatcaatcaatac 364
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gaatttttccaaggtatggctttttcaaggctggaccaatattcagagatcaatcaatac 75

                                                                       
Query: 365 tatcggtcacacccacagactgaagaagaaaaattacaagatcatattatcaaatgcaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  tatcggtcacacccacagactgaagaagaaaaattacaagatcatattatcaaatgcaga 15

                         
Query: 425 aagaatactatgaa 438
           ||||||||||||||
Sbjct: 14  aagaatactatgaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)