BAC Information

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BAC

Clone NameMSMg01-459J16
Chromosome7 (Build37)
Map Location 69,119,433 - 69,119,666
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625287, D0Kist2, LOC100041248, LOC100041259, EG664943, B230209E15Rik, EG620934, LOC100041293
Downstream geneNdn, Magel2, Mkrn3, Peg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459J16.T7 (MSMg01no459_j16.b1)MSMg01-459J16.TJ (MSMg01no459_j16.g1)
ACCAG545157AG545158
length774794
length of high quality
(start - end)
---234 (192 - 425)
definitionCHROMAT_FILE: MSMg01no459_j16.b1 PHD_FILE: MSMg01no459_j16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:35 2005CHROMAT_FILE: MSMg01no459_j16.g1 PHD_FILE: MSMg01no459_j16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGCTTGTCTCCATCTGCTTTAAAATGCAGTGTTTTTATGACGGTGA
GAGCTATACTAATTTCTCTGTGACATACACACTTTCTAACTGCGTTTATA
AATATATCATGCCCATGACATGACTGTCATAAACTTTCTGCCGGGATCTG
TAACCTCACCAGCCATGAACTACTGACCAAGGATACAGTATCCAGGAAGA
TTTTTCTTCTTTGCCATGATATAAATCTACTTACTCACCATGAATAGTGT
GAACGATTGGGTTATGTATTTGAGCCACTAAGCCTCCAATACCCTGCTAA
TAATTACTATTTTAAAAATGATGACTATCTCAGAAAGATGGGAAAATCAT
AATGTTTAACAACATGTTTTGTAGCAGTGTTATCTGTAGGGTTTACATCA
ATATAACATGGTGGTAAGAAATTGCCCAATGTAAAGCTGATTGCTATTGG
ATACTCCATATCACTTCCATATTGCAATTAATTCTATAATGCACCTTATT
ATTGAATGATGTTAAACCCCTTGACTTATGTGTTGTCCATAGTGGGCCAG
GGACATAATCCTAATCCACTTTTTTTCCTGCTCTTGGCCCCCAACATTTT
TCGGGTTCTTGTTGGAAAAAAACACAGTCCTTTCTGTTTCTTCCCTCTCC
CTCCCATATCTCCAAAACATATTTACCTTTTGTAAAATCTCCTTCAAACC
CTCCTTTTCCTTTTTCCTCACTTT
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTTTACAGTCAGGACAAGAGAAATTTCTCA
CTTCTGAGAAGTCCTATCTGTATATACTATGATGAGGAGATGATATCTAA
AGTGTAATAATAAAATGAGGAACTGGAGGTCAGTGAAACTAGACCATACT
CATACATATTTATCATAGAAAGCAAGTACCTAGTAGGAGAATATCCGCAG
GTGCACAGAACAGAGGAATCTGACTTATGAGCCCTAGTGTTTTACCTCTA
TTGTCTTTCCTGAATATTCAAGAATGAATGGATGCACCAAAATATAATGC
AGACCCCTGTTGTTTATGGGTGCTACTCTGCAAAATGCTTCTTTTATCCT
GTTACAAGCTATATTTTACTTAGTTCAGTTCACTGTTGTGTTCCTTTATA
TAAAACCTGTGGATCCAAAACACCCTAACTGGAAAATACAAAACCTAATG
GAGCCATTACTGATGACTCTTAACCTATTTTGTAAAATCCAAATTTCCCC
AGGGGATATGGGGTATCTACTTTTATTATTGGGGGGAAAGAATATTTAAA
ATTGTGGGTTTTCCCGCTAGTGTTCCTCTCCTATAAATTTTCCCTTAAAA
AAACACACCCTTGTTTTTTTTTCCCTTATTATCCCCTTATAAATTCTCTT
GTGCTTAAATTCTTTCCTCTTTTCCCTCACAGGCACACGGGTTACCCCCC
ACTTTCATTCCGTTTTTTTTATTTTTTCCGTCTCCCTCCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_j16.g1 MSMg01no459_j16.g1 CHROMAT_FILE:
MSMg01no459_j16.g1 PHD_FILE: MSMg01no459_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:35 2005
         (234 letters)



>mm_chr7_69119233_69119866
          Length = 634

 Score =  445 bits (230), Expect = e-129
 Identities = 233/234 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaccatactcatacatatttatcatagaaagcaagtacctagtaggagaatatccgcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaccatactcatacatatttatcatagaaagcaagtacctagtaggagaatatccgcagg 260

                                                                       
Query: 61  tgcacagaacagaggaatctgacttatgagccctagtgttttacctctattgtctttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcacagaacagaggaatctgacttatgagccctagtgttttacctctattgtctttcct 320

                                                                       
Query: 121 gaatattcaagaatgaatggatgcaccaaaatataatgcagacccctgttgtttatgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatattcaagaatgaatggatgcaccaaaatataatgcagacccctgttgtttatgggt 380

                                                                 
Query: 181 gctactctgcaaaatgcttcttttatcctgttacaagctatattttacttagtt 234
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 gctactctgcaaaatgcttcttttatcctattacaagctatattttacttagtt 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)