BAC Information

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BAC

Clone NameMSMg01-459N05
Chromosome7 (Build37)
Map Location 88,619,728 - 88,791,989
singlet/doubletdoublet
Overlap geneAp3b2, BC048679, Fsd2, Whdc1, Homer2
Upstream geneBlm, Crtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355
Downstream gene2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3, 1700129I04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459N05.T7 (MSMg01no459_n05.b1)MSMg01-459N05.TJ (MSMg01no459_n05.g1)
ACCAG545327AG545328
length785764
length of high quality
(start - end)
412 (45 - 456)456 (73 - 528)
definitionCHROMAT_FILE: MSMg01no459_n05.b1 PHD_FILE: MSMg01no459_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:53 2005CHROMAT_FILE: MSMg01no459_n05.g1 PHD_FILE: MSMg01no459_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,619,728 - 88,620,138)(88,791,549 - 88,791,989)
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTATTCCTCTGCTTCCCCACCTGAGTGGCAGGATGACAGGCATGT
GCTACATCATCCCGTTTATGGGGTACTGGGGATCAAACCCACGCCCTTGT
GCACACTAAGCAAGGGCTCTCCCCAGACCCCCTGGGTCCCTAGATCCAGT
ATCAGAAGTAGTAGTAGACACACTAACGTGTGAGGAAAGTTAGTCACTGT
CCAATGACATCGCCCACTAATAAAGCATTAGAATGGGAAAGGGAAGGAGG
CACAGGATCTCAAAGCTTTGCCTGTTGGTGTATGTGTTCCAGAAAGTCTG
AAGGGGCAGGTACATGAGAGACAGAACTGCAGAGTTTGATGACTTCACAC
TAGTAACATCACTTCCTGGAGTCTACAATTAAAATATAAAATGCAAGCGA
TACAGGCTTCGGGGGGGACTATGAAAATTAAGTTATTCTGGGAAGCGTCC
GCTGCATACCACGCAGTCGTGTAACCGTTTTCCTCCCAGATTGAACCATC
CTACCCCTAACGGAAGCTCCTGAGCTCCCATCGTAATAACTCCTCTAAAG
CTTCAGAAGTCCCTTGAAAACTGATCTGAATTTTCTAGGGCCTCTCCCCG
GCCGAAATAACTTTCCCCTACTTAAGGTCCGAGCTTCCCCCTCAACTCCG
AGTCACGTCCCCTTATTCCCCCTGATTTCTCCCGCTATCCGCATTTTCCC
TTTCCCCTTAATTCCCGCGATTCTTCACTTTCTTT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAGACTAAGCCAGAGCTTCTCAGGCTG
CCTCCCACCGTGTCCCTGGTCACCTTAGATGTTCTTAAAGTCCACTTAGA
GTTCCAGCTTCACTACTGCGGCATGGAGAACTGCAGCAGAGAGCCTTGTT
TGGCAAAGGGAGCAAAAGGCTAGGGAATGAGGGTTAGACCTAGTCATTGA
AATACTATTCCTGTCTCTAGGAGCTGGGGACAGGGGCAGGTCTCTTGTCC
CAATAATACTAGATGTTCCAGAACCACCACAGTCCTGCTTGACTCTCCCT
TGACAGCAGCAAGTAAGATGGGTAGGAAACATCAAGAGAGAACCTTGTGC
TTCCAGCTTCCATAGTTAGGCAGGGAGTGGAGTCAGGACCTCACTCAGAC
CATTCTAGGTATCACCACCCGGCTTACCCTACTTTGCCCAGTACTGAAGT
CTTGCTGCCTCGAAGCCCAGCTCCTGCCTTGTCTGAATACTCTAGATTTC
TTGCCTTCCTTTCTGTGGCTGCAGAAAATGGAGACTGCTGAACTGCTTGC
CAGGCACCTGTGCTGACCTGGAGCCCCCGCTTCCTGGGGTTCTGGTTTGG
ACCCCCCCCTCCACATCCCCCCGGAACCAAAAGGGGGCCCGTTCCCTTTG
TTTCTTTGAAAACCCCCTGGGGGACCTGGTTCTCTTTAGCGCCCTTTTCT
CATCTATGCGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_n05.b1 MSMg01no459_n05.b1 CHROMAT_FILE:
MSMg01no459_n05.b1 PHD_FILE: MSMg01no459_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:53 2005
         (412 letters)



>mm_chr7_88619527_88620338
          Length = 812

 Score =  708 bits (366), Expect = 0.0
 Identities = 400/412 (97%), Gaps = 5/412 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttattcct-ctgcttcc-ccacctgagtggcaggatgacaggcatgtgctaca 62
           ||||||||||| ||| |||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattccttat-ccttctgcttctaccacctgagtggcaggatgacaggcatgtgctaca 260

                                                                       
Query: 63  tcatcccgtttatggggtactggggatcaaacccacgcccttgtgcacactaagcaaggg 122
           |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatcctgtttatggggtgctggggatcaaacccacgcccttgtgcacactaagcaaggg 320

                                                                       
Query: 123 ctctc--cccagaccccctgggtccctagatccagtatcagaagtagtagtagacacact 180
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctctccccagaccccctgggtccctagatccagtatcagaagtagtagtagacacact 380

                                                                       
Query: 181 aacgtgtgaggaaagttagtcactgtccaatgacatcgcccactaataaagcattagaat 240
           |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 aacgagtgaggaaagttagtcactgtccaatgacatcgcccaataataaagcattagaat 440

                                                                       
Query: 241 gggaaagggaaggaggcacaggatctcaaagctttgcctgttggtgtatgtgttccagaa 300
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 441 gggaaagggaaggaggcacaggatcccaacgctttgcctgttggtgtatgtgttccagaa 500

                                                                       
Query: 301 agtctgaaggggcaggtacatgagagacagaactgcagagtttgatgacttcacactagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtctgaaggggcaggtacatgagagacagaactgcagagtttgatgacttcacactagt 560

                                                               
Query: 361 aacatcacttcctggagtctacaattaaaatataaaatgcaagcgatacagg 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacatcacttcctggagtctacaattaaaatataaaatgcaagcgatacagg 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no459_n05.g1 MSMg01no459_n05.g1 CHROMAT_FILE:
MSMg01no459_n05.g1 PHD_FILE: MSMg01no459_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:53 2005
         (456 letters)



>mm_chr7_88791167_88792022
          Length = 856

 Score =  797 bits (412), Expect = 0.0
 Identities = 438/456 (96%), Gaps = 15/456 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagactaagccagagcttctcaggctgcctcccaccgtgtccctggtcaccttagatgt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 agagactaagccagagctgctcaggctgcctcccaccgtgtccctggtcaccttagatgt 764

                                                                       
Query: 61  tcttaaagtccacttagagttccagcttcactactgcggcatggagaactgcagcagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tcttaaagtccacttagagttccagcttcactactgcggcatggagaactgcagcagaga 704

                                                                       
Query: 121 gccttgtttggcaaagggagcaaaaggctagggaatgagggttagacctagtcattgaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||             
Sbjct: 703 gccttgtttggcaaagggagcaaaaggctagggaatgagggttagac------------- 657

                                                                       
Query: 181 tactattcctgtctctaggagctggggacaggggcaggtctcttgtcccaataatactag 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 --ctattcctgtctctaggagctggggacaggggcaggtctcttgtcccaataatactag 599

                                                                       
Query: 241 atgttccagaaccaccacagtcctgcttgactctcccttgacagcagcaagtaagatggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 atgttccagaaccaccacagtcctgcttgactctcccttgacagcagcaagtaagatggg 539

                                                                       
Query: 301 taggaaacatcaagagagaaccttgtgcttccagcttccatagttaggcagggagtggag 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 caggaaacatcaagagagaaccttgtgcttccagcttccatagttaggcagggagtggag 479

                                                                       
Query: 361 tcaggacctcactcagaccattctaggtatcaccacccggcttaccctactttgcccagt 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 478 tcaggacctcactcagaccattctaggtatcaccacccggcttacccttctttgcccagt 419

                                               
Query: 421 actgaagtcttgctgcctcgaagcccagctcctgcc 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 418 actgaagtcttgctgcctcgaagcccagctcctgcc 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)