BAC Information

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BAC

Clone NameMSMg01-459P23
Chromosome7 (Build37)
Map Location 16,246,446 - 16,246,827
singlet/doubletsinglet
Overlap genenone
Upstream geneEG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3
Downstream geneLOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459P23.T7 (MSMg01no459_p23.b1)MSMg01-459P23.TJ (MSMg01no459_p23.g1)
ACCAG545458AG545459
length790787
length of high quality
(start - end)
382 (69 - 450)377 (71 - 447)
definitionCHROMAT_FILE: MSMg01no459_p23.b1 PHD_FILE: MSMg01no459_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:07 2005CHROMAT_FILE: MSMg01no459_p23.g1 PHD_FILE: MSMg01no459_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:07 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTGGATCGCTTTGTCAGAATATGGGGTTGGATCTTTCTCTTGATTT
AGCTGTACCACTCCTGGGCATATATCAAAGGGGTGCTTTTCCCCACCACA
AGGTCACTTGATCAACAGTGTACATTGCTGCTCTATTCATAATAGCCAGA
AATTAGAAATAGCCTAGGTGTCTGCTGGGGACAGCATACAAGGATAGGGA
CTGCCTGTAGTAGGCCAGGATGGAGATATTTCAGTAGCATGTAAAAAAAA
AAGTGTTCCCATTTCTCCTATTTTTAGGCACAGACAACGGTCATATAGGT
TTCATTTGTGCATGACTGCTTTTCATTTCGCATTGGAGACCATACTTATT
CTATTATATCTGACTTTCTTACTTCTTTCTTCTGCTCTGGTACATTTCTG
TGAAACTAGATTTTCCTTAACGCAACGACTCCTAAACAGCCTAAAATTGT
GTCTGGGCCCACACCTTATTACACCCCATACTAATAGAAACATTTTGCTT
AACGGTTGGAACCTTCTCAACAAGGTCATCTTCGTTGTGGACACGCGGCT
CCTCTTATAATATCGTATAAAATAACCCGGTACGTGCTCCTTACAATTAA
TACCCGCTCCTAACTCCCTTCCCTCTTCTTTACCGTCGTTTCTTTGCATC
CTCCCCTCTTATCGTTTTAATACTCCGTTACCCCCGGTTTACTGCCCTAA
AATCTTTTTTTTTACCCTTTAATCTCTTCTATCCTATCTT
TGAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGGTGAGGGGAGTTCCTTGATGGTCTAAA
CTCAGGAGGATAGCTGACATTCACATGTCTCTGGCACACAGAATCTGGAC
TGGCAGCGAAATCAGGAACTTCACCGCCACTGCTGGAAGTAGGCCTATAG
TGAGGTCCACTTCCAATTCTCCTAGGGAGTTGTGAACTCTTCCGACATTC
TTTAGCTCGTCTGTTCTTGAACCAGGTCTGGAAAACAAAGGAGACATCAG
AGGAATACCTGTAACGGGACCACAGGTTGAAGCCTTTAGATGGGAGGTGT
TTTTATAGCCATAGAAACTGCATGAGGCAGAAACAGAGAAGTCTGAGGCT
CTAAATCCCAAAGAGATCGCAGTAAGGTAGGATGTATATGACTTGGCACC
AAAATCTGGGGAAGATTCAGATAGTGTGTCCTGTGTCTTAGTACAACCGT
GGTGAATGGTCTCTTAAACTCTGTAGAAAAAATATCTTGACCCAATATGG
TCCAGCCTGAACCTCAATGCGTTGTACAGTTCAAATTTTTTCCCTCAATG
GTTTTATTAACTCCCTTCCCAAAATTTTTTGGTTCCTTTATTCTTTCTCT
AAACCTTATCTTCTATTTTTCGCCGGTCACAAACTACCTCTCCCCCTTTC
CACTCACCACATTTAATTCCTTAAATTTTTTTTTGCATTTCGTTCTCTCT
TTTTTTATATCTTCTCTTTTTCCCATCTATCTCTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_p23.b1 MSMg01no459_p23.b1 CHROMAT_FILE:
MSMg01no459_p23.b1 PHD_FILE: MSMg01no459_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:07 2005
         (382 letters)



>mm_chr7_16246246_16247031
          Length = 786

 Score =  673 bits (348), Expect = 0.0
 Identities = 372/382 (97%), Gaps = 4/382 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaatatggggttggatctttctcttgatttagctgtaccactcctgggcatatatcaa 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaatatgggattggatctttctcttgatttagctgtaccactcctgggcatatatcaa 260

                                                                       
Query: 61  aggggtgcttttccccaccacaaggtcacttgatcaacagtgtacattgctgctctattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggggtgcttttccccaccacaaggtcacttgatcaacagtgtacattgctgctctattc 320

                                                                       
Query: 121 ataatagccagaaattagaaatagcctaggtgtctgctggggacagcatacaaggatagg 180
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 ataatagccagagattagaaatagcctaggtgtctgctggggacagcatacaagaatagg 380

                                                                       
Query: 181 gactgcctgtagtaggccaggatggagatatttcagtagcatgtaaaaaaaaaa----gt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||
Sbjct: 381 gactgcctgtagtaggccaggatggagatatttcagtagcatgtaaaaaaaaaaaaaagt 440

                                                                       
Query: 237 gttcccatttctcctatttttaggcacagacaacggtcatataggtttcatttgtgcatg 296
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttcccatttctcctaactttaggcacagacaacggtcatataggtttcatttgtgcatg 500

                                                                       
Query: 297 actgcttttcatttcgcattggagaccatacttattctattatatctgactttcttactt 356
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 actgcttttcatttcgcattggagtccatacttattctattatatctgactttcttactt 560

                                 
Query: 357 ctttcttctgctctggtacatt 378
           ||||||||||||||||||||||
Sbjct: 561 ctttcttctgctctggtacatt 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 786
Length adjustment: 9
Effective length of query: 373
Effective length of database: 777
Effective search space:   289821
Effective search space used:   289821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)