BAC Information

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BAC

Clone NameMSMg01-460A12
Chromosome7 (Build37)
Map Location 71,445,267 - 71,445,601
singlet/doubletsinglet
Overlap geneBB128963
Upstream geneOtud7a, LOC545971, LOC100041386, LOC665083, Klf13, E030018B13Rik, Trpm1
Downstream geneMtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik, Ndnl2, Tjp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460A12.T7 (MSMg01no460_a12.b1)MSMg01-460A12.TJ (MSMg01no460_a12.g1)
ACCAG545484AG545485
length1,455701
length of high quality
(start - end)
---526 (57 - 582)
definitionCHROMAT_FILE: MSMg01no460_a12.b1 PHD_FILE: MSMg01no460_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:10 2005CHROMAT_FILE: MSMg01no460_a12.g1 PHD_FILE: MSMg01no460_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:10 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TATCCACCATCCTTGCNCACCCAACCTATNTNTCATGTTTTTTTCTTTCG
TTTATGTGGGTGATGTTAGAATGTTTATTTTCTTTTCTAATGTCGTCTGG
ATTATGTCGGCGGCGCTGGGATGATGGGTGGCCGTTGGTTATTGGGTGGT
TCTGTTGCGTGCCGACCTCGCCCCAATGGTGCAATCCGATGAGAAGCGAG
ACTGGTCAACGTTCGCCAGTGCGGCCGCCGCGGCTCTGCCCTGTTGGCGC
CGTCTGGCGTAGCGTGTGTTTCTTGGGCGCGGAGACCGAGTCAACAATCA
CCCAAATATATCGCTTACAGTATATAATTATGATTAACCATNANACCAGT
GCACCCGCCAGGAAGCAGTGTTGATATGTGCTGTACAATTCTTATGTCCC
ATGCCCTCCTTAGNCATAAGACTAGAAATACAGNCATAGAGTATATAAGA
AGAATAAATGAGCACAACAGCGCACTCGGTATAGACGAGTGATCGACGGG
GCGTGGAGTTGTGATGTGCCGTCGGTGCTCCGCTGTTTATGGCATATGAT
ATTGATCTGCGCTCGGCTGTGTGTCTTGTGCGTTATGGTGTGGCTGCGGT
CTGATTTCATGTCGCACTCGCGCGTGTGTGCTGTAGAAGTCAGTAGGGAG
AACTGTTACTAGTTCGTTTGCATATATATTGCATCGCTGTGACCACCTGA
GNCTCACGCAAATTGCCACGCGCGCGCTCGGCGGACGGAGGGGGTGATCG
CGGACACGCACCTCTCAGCGGCCGCGAGGTTTGTTATANGTCGTAATATA
CTGGATGTAAGAGTTGCACCTGTTGTACTGTGCTCGCCGCCGTATAGGTT
ATATGTGAGATTCCGACTCTGACATGCTCGCGCCTCGTCTGTAGTCGTCT
GCCTCGCATCNTACAATCACGTACCTCGACCGCGACGGCTGCGTGACATT
GATTCACAGTGCGCAACTGTGTAGATATGTATTTATATGGTTGACCGCGG
TCTAACACCGTGCATNGTCCGCGTATCGCGTGATGATACTGGCAGTGAAG
ATCGCGACGATGCGCACNTCGCTGATGTGACGAGTATGTCACGCGTCGTC
GCTATCTATGATAGCATCGACATACCAGGATCGCACGTCAGGCGCACGCT
GTGTGTCATGTACTACTGATGACGTGATGATGAGTGGCCGCGCTGCATCG
TTCGCGCCGCGCGGCGAGTCGAGACGACAGAGCACGGAGCGAGNGTCNCG
CGCTGCGGATCAGCTNTAATGTACTACGAGTAACGACGCGGCTGATAGTC
CATGCGTGCGNCAGCTAACGCGAGCCAGTGTGCGCGTCGATGTAGCGCGC
GTTGTTGTATCTGATCTAGATGATATTCGAGCACATGTGCGATATCTGAT
GTATACTTATTTATGGCCTACTCGCGTCTCATCTCGCNGTACGCGATCTC
TCGTG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTGCCCCGCGGAATTCAAAAACAATACAGCTTAGCAGCATTACCTTCTT
GGCACTTTCAGGACCGGACTCATCAAAGCGAAACCTGACAATTCGGAAAT
CTTTACAATAAATAATTAATTCTGTTGGATTGAATTTCAGCTTCTGGTTG
GGACCTAGGACTTTCTGTTTCCTCTTGTGGTCATTCACTGAAGAAGAAGA
AGAAGAAATAAAAGTGACAAAGTTCTTTCCTGGTGCTCATTTACAGTTCT
GACTGCTTCTCAGCATAGATGAGCACCATGCCGCCATTGCTGGAGCAGAC
CCATCGCTGGGGCCCTGCCTTTTCATAGCTGCCTGAGGCTCCTAGAACTT
TGGAAGGTTGGCTCTAACTCTCAGTTTGGAGATATTTTAGAGTGTCTTTG
CATTGATACACTTAATGATTTAATTTTTAATTAAAAAGAGAATACAATTT
ATAAACTAAAAAAAATTATATCTCCATTTTACAAGCATGTCTTGATTCTC
AGTTGAGTTCTTGGGACTTACAAAGGAGTAAATGTAAAAGTGAGTCTATA
GAAATAAAACTCCAACTTCACTATCTGAGACCTTGGCCCTTTAAAGAATA
TTTCTGGATTTCAATCAACCCGCTAGAGGCCCATTCCATTCTACGAAAAG
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_a12.g1 MSMg01no460_a12.g1 CHROMAT_FILE:
MSMg01no460_a12.g1 PHD_FILE: MSMg01no460_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:10 2005
         (526 letters)



>mm_chr7_71445062_71445984
          Length = 923

 Score =  592 bits (306), Expect = e-173
 Identities = 329/338 (97%), Gaps = 3/338 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcaaaaacaatacagcttagcagcattaccttcttggcactttcaggaccggactc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gaattcaaaaacaatacagcttagcagcattaccttcttggcactttcaggaccggactc 481

                                                                       
Query: 66  atcaaagcgaaacctgacaattcggaaatctttacaataaataattaattctgttggatt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 atcaaagcgaaacctgacaattcggaaatctttacaataaataattaattctgttggatt 421

                                                                       
Query: 126 gaatttcagcttctggttgggacctaggactttctgtttcctcttgtggtcattcactga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 420 gaatttcagcttctggttgggacctaggactttctgtttcctcttgtggtcattcact-- 363

                                                                       
Query: 186 agaagaagaagaagaaataaaagtgacaaagttctttcctggtgctcatttacagttctg 245
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct: 362 -gaagaagaagaagaaataaaagtgacaaagttctttgctggtgctcatttacagttcta 304

                                                                       
Query: 246 actgcttctcagcatagatgagcaccatgccgccattgctggagcagacccatcgctggg 305
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 303 actgcttctcagcatggatgagcaccatgccgccattgctggagcagacccattgctggg 244

                                                 
Query: 306 gccctgccttttcatagctgcctgaggctcctagaact 343
           ||||||||||||||| ||||||||||||||| ||||||
Sbjct: 243 gccctgccttttcatggctgcctgaggctccgagaact 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 923
Length adjustment: 10
Effective length of query: 516
Effective length of database: 913
Effective search space:   471108
Effective search space used:   471108
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)