BAC Information

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BAC

Clone NameMSMg01-460B08
Chromosome7 (Build37)
Map Location 74,189,505 - 74,189,987
singlet/doubletsinglet
Overlap genenone
Upstream genePcsk6, Snrpa1, H47, Chsy1, Lrrk1, Aldh1a3, Asb7, Lins2, Lass3, Adamts17
Downstream geneLysmd4, Mef2a, EG665304, Lrrc28, Ttc23, Dmn, LOC665319, LOC100041771, Igf1r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460B08.T7 (MSMg01no460_b08.b1)MSMg01-460B08.TJ (MSMg01no460_b08.g1)
ACCAG545524AG545525
length724719
length of high quality
(start - end)
487 (42 - 528)502 (74 - 575)
definitionCHROMAT_FILE: MSMg01no460_b08.b1 PHD_FILE: MSMg01no460_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:14 2005CHROMAT_FILE: MSMg01no460_b08.g1 PHD_FILE: MSMg01no460_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGAGTCGTAAGTGATCTGGAAGGATTCAGAGATGCGACACAGATTTACT
TAATGGGACCTGTGGGTCTCCCTAGTTGGCGGTTTGAGGAGAAGTTTAGA
GAAATGTAGACTGCACTGGGGCAGGGCTCCTGGAGGCCATAGAAGAAGGG
CCTAATGTTTTCAGATATCTTGGTTCCAGCCCCTCATTGGTCCTTTGGGA
ACACCCTTCATCTTTGTCACAATGCTCCTCCATCTCTGGGCCACTTGGCT
GAGTAGGAGTCATGGCTGTGACCCTCCCATCTCTTATTTGCTCAGACGCT
CAGACGGGAGGGTGGGGGATGTCTCTTGTGTGAACCAAAGGAGCTGGGAA
AAAGGCACTTTGTCCAGATGCGGCTTTCCAACACTTTACTGAGGATGGAG
CCTGCTGTTGGCCTGGTCACATGGGTCTGAGCCTCTGGACATTTCTACTG
TGAAACGATCCCACAGGGAAAGCAGAAACAGATCTGGCAAGCGGCCACCT
CAGTGGGTTTCTGTCTTAAGGCTTTCCCTCTTTGGGATCTTTATTGACGA
AAGTCCTTGTTCCTCCTTTGGAGGGGGAATGGGTTTTTCCGCACCCCTTT
CCCCTTTTCCATATTCTCTCCTTTTTCTCGTTTTTTCCGATTAGCCATTT
GATTATGCGTTCTCCCACCCTCTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAACTGCTCAGTAATAAAAAGACAGTT
CAGTTCTTACAAGCCAGCAAAGAAAGGGCTGGAGAGGTAACCCAGTCAAT
ATGTCGTTCATCTCCCAAGCTCAAGGACACCAGTTCCCTCCTCAGAACCT
ATGCATTAATTTTTAAAAAGCTGAATATTGTGGCACAAGCTTGTAATCCC
AGTGGCAAGTTTGTCTGTAGTAAAGTGCAGGCATGTATACACACACACAC
ACACACACACACACACACACATATACACACGAGCAAAGAGCTCAAATGAC
TCTACAAAGGATAAAATACAGACAGTCAATCAATATATAAGATGCTGAGC
ACTAAGGGCCACCAGGGAAATTTAAATCAAAATCACCCGGAGATACTTCG
CAACTACTCATAGAACAACTAGGTTATAATTAAAAAAAGAAGGCCACTAA
TGAGTGTTGACAGGGTTCAGAGAATGAAAGCCTTCATATGCTGCTGCTAG
GAATCTGAAATAGCATAACCATCTTAGAGAAAGTGTGGAAGTTTATTAAA
AGGTTTGAAAATGTGATAGAACCCAGCCCCCCCATTTTTAACCCATTTTT
AATTCCAGGCCTCCCGGGAGATTTGGATAACGGGCATTTAAACAAATTTA
CCCCTCCATTTTTGAGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_b08.b1 MSMg01no460_b08.b1 CHROMAT_FILE:
MSMg01no460_b08.b1 PHD_FILE: MSMg01no460_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:14 2005
         (487 letters)



>mm_chr7_74189301_74190187
          Length = 887

 Score =  895 bits (463), Expect = 0.0
 Identities = 478/483 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgagtcgtaagtgatctggaaggattcagagatgcgacacagatttacttaatg 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gaattctgagccgtaagtgatctggaaggattcagagatgcgacacagatttacttaatg 628

                                                                       
Query: 65  ggacctgtgggtctccctagttggcggtttgaggagaagtttagagaaatgtagactgca 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 627 ggacctgtgggtctccctagttggcggttcgaggagaagtttagagaaatgtagactgca 568

                                                                       
Query: 125 ctggggcagggctcctggaggccatagaagaagggcctaatgttttcagatatcttggtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctggggcagggctcctggaggccatagaagaagggcctaatgttttcagatatcttggtt 508

                                                                       
Query: 185 ccagcccctcattggtcctttgggaacacccttcatctttgtcacaatgctcctccatct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ccagcccctcattggtcctttgggaacacccttcatctttgtcacaatgctcctccatct 448

                                                                       
Query: 245 ctgggccacttggctgagtaggagtcatggctgtgaccctcccatctcttatttgctcag 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 447 ctgggccacttggctgagtaggagtcacggctgtgaccctcccatctcttatttgctcag 388

                                                                       
Query: 305 acgctcagacgggagggtgggggatgtctcttgtgtgaaccaaaggagctgggaaaaagg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 acgctcagacgggagggtgggggatgtctcttgtgtgaaccaaaggagctgggaaaaagg 328

                                                                       
Query: 365 cactttgtccagatgcggctttccaacactttactgaggatggagcctgctgttggcctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cactttgtccagatgcggctttccaacactttactgaggatggagcctgctgttggcctg 268

                                                                       
Query: 425 gtcacatgggtctgagcctctggacatttctactgtgaaacgatcccacagggaaagcag 484
           ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 267 gtcacatgggtctgaacctctggacatttctactgtgaaaagatcccacagggaaagcag 208

              
Query: 485 aaa 487
           |||
Sbjct: 207 aaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)