Query= MSMg01no460_d15.b1 MSMg01no460_d15.b1 CHROMAT_FILE:
MSMg01no460_d15.b1 PHD_FILE: MSMg01no460_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:25 2005
(344 letters)
>mm_chr7_123871922_123872665
Length = 744
Score = 638 bits (330), Expect = 0.0
Identities = 340/344 (98%), Gaps = 2/344 (0%)
Strand = Plus / Plus
Query: 1 ctgctgttgaggcctctgctgcctgtagctagctgagctctaaggctagcttggttggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgctgttgaggcctctgctgcctgtagctagctgagctctaaggctagcttggttggtg 260
Query: 61 ctttacagtaagtaagcaggaggagtcttttacctcctttttgctggactcctcttctat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttacagtaagtaagcaggaggagtcttttacctcctttttgctggactcctcttctat 320
Query: 121 ctcaaatccttctccacaacacagtttgtgaaacagatgggatctgacagtcccgaagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaaatccttctccacaacacagtttgtgaaacagatgggatctgacagtcccgaagcc 380
Query: 181 cctgagaaaatcactcccaggcaccttcccacttttcagagtgttacagtgtgtgtgtgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgagaaaatcactcccaggcaccttcccacttttcagagtgttacagtgtgtgtgtgt 440
Query: 241 gtgtgtgtgtgtgtgtgtgtaggtcagaatttaaactatgaggtataaaacccagggtct 300
|||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct: 441 gtgtgtgtgtgtgtgtgt--aggtcagaatttaaactatgaggcacaaaacccagggtct 498
Query: 301 gtgacacctgactgaggagacaacagatgatcagagagaaagcg 344
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtgacacctgactgaggagacaacagatgatcagagagaaagcg 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_d15.g1 MSMg01no460_d15.g1 CHROMAT_FILE:
MSMg01no460_d15.g1 PHD_FILE: MSMg01no460_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:25 2005
(545 letters)
>mm_chr7_124049262_124050204
Length = 943
Score = 812 bits (420), Expect = 0.0
Identities = 485/510 (95%), Gaps = 13/510 (2%)
Strand = Plus / Minus
Query: 47 aaaaagaaaaagaaaaaga-aaa---aaaga-aaa-agaaaaagaaaaagaaa---aaag 97
||||||||||||||||||| ||| ||||| ||| ||||| ||||| ||||| ||||
Sbjct: 941 aaaaagaaaaagaaaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaag 882
Query: 98 a-aaa-agaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaa 155
| ||| ||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||||
Sbjct: 881 agaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaagagaaaa 822
Query: 156 agaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaa 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 agaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaaagaaaa 762
Query: 216 agaaaaagaaaaagaaagccttgacctttgtcctttcaggttgtccacacaggtctgggc 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 agaaaaagaaaaagaaagccttgacctttgtcctttcaggttgtccacacaggtctgggc 702
Query: 276 caaagtgatgcctatcagactgacacaagctactctctgaccttttaaggaaatgttggt 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 caaagtgatgcctatcagactgacacaagctactctctgaccttttaaggaaatgttggt 642
Query: 336 caggtctttcccaccagaaagcacctgctttttcatctttaatatttgctagatctcact 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 caggtctttcccaccagaaagcacctgctttttcatctttaatatttgctagatctcact 582
Query: 396 gtatgatgcatattttatccctcttcatgctttaggagcttgactctaaggattatgaat 455
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gtatgatgtatattttatccctcttcatgctttaggagcttgactctaaggattatgaat 522
Query: 456 tacaaacatcacactggatatccttaaaagcttaacatccaacatataatttcatttttc 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tacaaacatcacactggatatccttaaaagcttaacatccaacatataatttcatttttc 462
Query: 516 tggtgtgtgtgtatacatgtatacttgtgt 545
|||||||||||||| ||| ||||||||||
Sbjct: 461 tggtgtgtgtgtat--atgcatacttgtgt 434
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 161
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 943
Length adjustment: 10
Effective length of query: 535
Effective length of database: 933
Effective search space: 499155
Effective search space used: 499155
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
