Query= MSMg01no460_h01.b1 MSMg01no460_h01.b1 CHROMAT_FILE:
MSMg01no460_h01.b1 PHD_FILE: MSMg01no460_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:41 2005
(491 letters)
>mm_chr7_139096092_139096981
Length = 890
Score = 859 bits (444), Expect = 0.0
Identities = 480/492 (97%), Gaps = 3/492 (0%)
Strand = Plus / Plus
Query: 1 cgatttcagatcagcttcctcaattatgaaaagcccttggtactggccccccactcactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgatttcagatcagcttcctcaattatgaaaagcccttggtactggccccccactcactt 260
Query: 61 cactggttggatggcacacacattttaaacatgggactcagttttccttgacagagtgga 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactggtgggatggcacacacattttaaacatgggactcagttttccttgacagagtgga 320
Query: 121 aacatgatgtcaattcaatcccttaataaccaaggcaccacacttagatggctccttggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacatgatgtcaattcaatcccttaataaccaaggcaccacacttagatggctccttggg 380
Query: 181 ggactccgaccacccatcctttccagatggggaaaaaactgaagatcccataggaactct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggactccgaccacccatcctttccagatggggaaaaaactgaagatcccataggaactct 440
Query: 241 agttttgtcagtatagcagcataagctagccccaagacagggctgcaggagggaa-agac 299
|||||||||||||| |||||||||||||||||| |||| ||||||||||||| || |||
Sbjct: 441 agttttgtcagtatcgcagcataagctagccccgagactgggctgcaggagg-aagagaa 499
Query: 300 gtctcatgcctccttagggacatcctccagtcctggtactctccagtaccaatctccatc 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtctc-tgcctccttagggacatcctccagtcctggtactctccagtaccaatctccatc 558
Query: 360 ctgtatctatcaatgttgactgatacccagtccctgtgaagaagagagactgtaaatggt 419
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 559 ctgtatctatcaatgttgactgatatccagtccctgtgaaggagagagactgtaaatggt 618
Query: 420 ggagctgaaaattcctggatcggaaccttctcggttgtagggtcttaaactcatttggga 479
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 619 ggagctgaaaattcctggatcggaaccttctcagttgtagggtcttaaactcatatggga 678
Query: 480 aaatggatccca 491
||||||||||||
Sbjct: 679 aaatggatccca 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 890
Length adjustment: 10
Effective length of query: 481
Effective length of database: 880
Effective search space: 423280
Effective search space used: 423280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_h01.g1 MSMg01no460_h01.g1 CHROMAT_FILE:
MSMg01no460_h01.g1 PHD_FILE: MSMg01no460_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:41 2005
(506 letters)
>mm_chr7_139269146_139270051
Length = 906
Score = 893 bits (462), Expect = 0.0
Identities = 495/506 (97%), Gaps = 2/506 (0%)
Strand = Plus / Minus
Query: 1 ccatacaccttctaatgctgccagtgtctgcttccgaaaggttcgataggctggcttgtc 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 705 ccatgcaccttctaatgctgccagtgtctgcttccgaaaggttcgataggctggcttttc 646
Query: 61 agaaggtattggcttatgtcactgtagacccatgagaagggcttcttcctcctcaccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 agaaggtattggcttatgtcactgtagacccatgagaagggcttcttcctcctcaccaga 586
Query: 121 cagctctaggaaagcagctggccccaaacctactaccccttagcatctgtcagagcctgc 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 cagcgctaggaaagcagctggccccaaacctactaccccttagcatctgtcagagcctgc 526
Query: 181 aggaatgtcacattcttgtcttcccccagccaaggttatcaggaacaggaccagaagcat 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 525 aggaatgtcacattcttgtcttcccccagccaaggttatcaggagcaggaccagaagcat 466
Query: 241 ggttcacctcacccaggtttctcccgagtctactcactctcagcctcatagaataagctg 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ggttcacctcacccagatttctcccgagtctactcactctcagcctcatagaataagctg 406
Query: 301 gagcatcatgggctgtgggtccccaggcctgctcagcactgctaaggacaagtccaccac 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 405 gagcatcatgggctgtgggtccccaggcctgctcagcactgccaaggacaagtccaccac 346
Query: 361 cagctctgctgctgtctcggtagtcaccccagctctgccacgagcttcctttgctgtgtt 420
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 345 cagctctgctgctgtttcggtagtcaccccagctctgccacgagcttcctttgctgtgct 286
Query: 421 ttcaaagcatgtttaatgtcacatgactgtttctcttgcagtcctgtaataggcataca- 479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 285 ttcaaagcatgtttaatgtcacatgactgtttctcttgcagtcctgtaatatgcata-ag 227
Query: 480 ctggctttgccaactgtaggttttta 505
||||||||||||||||||||||||||
Sbjct: 226 ctggctttgccaactgtaggttttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
