Query= MSMg01no460_l18.b1 MSMg01no460_l18.b1 CHROMAT_FILE:
MSMg01no460_l18.b1 PHD_FILE: MSMg01no460_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:04 2005
(417 letters)
>mm_chr7_139150192_139151008
Length = 817
Score = 737 bits (381), Expect = 0.0
Identities = 408/417 (97%)
Strand = Plus / Plus
Query: 1 tatttttcttactttctaaatcttgctaagcctttcaaagagttgagtcatttagaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatttttcttactttctaaatcttgctaagcctttcaaagagttgagtcatttagaaaaa 260
Query: 61 gattcatgtctgccttggtttccctgatcccaaaccagttccacaagaagccatgttgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattcatgtctgccttggtttccctgatcccaaaccagttccacaagaagccatgttgct 320
Query: 121 ggctggtttgacttctcccacacacacaccctggaacacacaagcacacacattgtctct 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 agctggtttgacttctcccacacacacaccctggaacacacaagcacacacattggctct 380
Query: 181 gcctctgggagatctgctggcaggctcagtccttgaatgtacacattgagcagggcctaa 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctctggcagatctgctggcaggctcagtccttgaatgtacacattgagcagggcctaa 440
Query: 241 tatttttataccccttgggtgtgctgagggccaagagctgagctcagagattgttcccac 300
|| || ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 aatgcatagaccccttgggtgtgctgagggccaagagctgtgctcagagattgttcccac 500
Query: 301 tagttcacacttgcagaaaagtgaattctcccccacacgtccacccacacagccctcaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagttcacacttgcagaaaagtgaattctcccccacacgtccacccacacagccctcaaa 560
Query: 361 agctaaagtggtacatgggtttcagttgccactgcagcagaagggacttaatttcca 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctaaagtggtacatgggtttcagttgccactgcagcagaagggacttaatttcca 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_l18.g1 MSMg01no460_l18.g1 CHROMAT_FILE:
MSMg01no460_l18.g1 PHD_FILE: MSMg01no460_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:05 2005
(486 letters)
>mm_chr7_139368216_139369101
Length = 886
Score = 899 bits (465), Expect = 0.0
Identities = 483/493 (97%), Gaps = 7/493 (1%)
Strand = Plus / Minus
Query: 1 tttcccacaaatactcctttcttttaaaagtaaacagaatcaaggacttccaggagggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 tttcccacaaatactcctttcttttaaaagtaaacagaatcaaggacttccaggagggca 729
Query: 61 aaaaccataatgtttaataatttttaaactttagg-------tttttttttttttgaaaa 113
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 728 aaaaccataatgtttaataattcttaaactttaggttttttttttttttttttttgaaaa 669
Query: 114 tcccaattatcttagggaatgggcacttcacaaaaataagtaaaagctgaaatagttgat 173
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tcccaattatcgtagggaatgggcacttcacaaaaataagtaaaagctgaaatagttgat 609
Query: 174 tctttttttcaccaggcaagccctctctcctactccctagaaaaagaaatcttccatcca 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tctttttttcaccaggcaagccctctctcctactccctagaaaaagaaatcttccatcca 549
Query: 234 aagcatgttatttttctcatatgaagaaacattgcttcttatcctaacaagtgcgtttac 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 548 aagcatgttatttttctcatatgaagaaacattgcttcttatcctaacaagtgcatttac 489
Query: 294 aagtgaatttaactgttacaagatggtttattatccactgaaattttagaaatcgtggaa 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 aagtgaatttaactgttacaagatggtttattatccactgaaattttagaaatcgtggaa 429
Query: 354 attaaggcaaagaaaattactagtatctctgttattccccccacctccaaaatcacaagt 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 attaaggcaaagaaaattactagtatctctgttattccccccacctccaaaatcacaagt 369
Query: 414 agatatttcctcctacttagcttttctctgactagtatttttggatacaactccaatcat 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agatatttcctcctacttagcttttctctgactagtatttttggatacaactccaatcat 309
Query: 474 actggttgtttgt 486
|||||||||||||
Sbjct: 308 actggttgtttgt 296
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
