BAC Information

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BAC

Clone NameMSMg01-461D10
Chromosome7 (Build37)
Map Location 63,100,411 - 63,100,738
singlet/doubletsinglet
Overlap genenone
Upstream geneLuzp2, LOC668796, Siglech, Tubgcp5
Downstream geneCyfip1, Nipa2, Nipa1, LOC672959, Herc2, p, LOC100040839, Gabrg3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461D10.T7 (MSMg01no461_d10.b1)MSMg01-461D10.TJ (MSMg01no461_d10.g1)
ACCAG546389AG546390
length728771
length of high quality
(start - end)
241 (74 - 314)328 (79 - 406)
definitionCHROMAT_FILE: MSMg01no461_d10.b1 PHD_FILE: MSMg01no461_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:43 2005CHROMAT_FILE: MSMg01no461_d10.g1 PHD_FILE: MSMg01no461_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCATAATTTGCGGCGCTAAACGACTCACATTTTCAGAGAGGGGGCGGA
ATCTTTGTTTTGCCATGAACCCCATTTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTCTTGAGCTCTTTATATATATTGGATATTAGTCCCCTA
TCCGATTTGGGATAGGTAAAGATCCTTTCCCAATTTGTTGGTTGCCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGA
GGTCCCATTTATCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTA
TTCAGGAATTTTTCTCTTGTTCTTCAAGGCTTTTCCCTACTTTCTCCTCT
ATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTAGA
TTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGCATTTTTCTAC
TTGATAACAACCAGTTGTGCCAGCACCATTTGTTGACAATGCTGTCTTTT
TTGTCTGTCACTATACCTATACCATGCAGTTTTTATCACAATCGCTCTGT
AATACTGCTTTAGGTCCGGCATTTTCATGTTTTACCTTTTCTAAGGAGGT
GTCTTAGTTAGGATTTTTATGGCGTGAATATACTTTTTTTTTCTTGTTAT
CTCCACTTATAGTAATCCTTTGTTTGCGTTTTGTTTTATTGGTTCCTCAA
TTTTAATACCTTCTCCTTCCTGTTTGTC
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGCATCAATAAGTGAAAATGT
ATAACACTTGGAATGCAATCGGTGTTACAGAAACTCCGATTCAAACAAAA
GAGGCTAAAGTCGGGGCAGAATGCTTCAGTACACATACAGTTGTATATAC
TTCTGAACTATTTAAAAAATTGTTGAGGTGGTATTTGTAAATTTTCTCAC
CTTTAAAAGTACTATTTCAGGCTAGGTTGTATCTTATTTCTGTAATGTCA
GCACTCAAGGAGCTTATATTTACAGGAAAGGTGGCGGTATCCACACCTCC
AGTCTTATCACTCATAAGGTGGAGGCAGGAGAATCAGGGGTTCAAGCCCA
CCAGGACTTCGGTAGACCCAACCTCAAGCCCCTTCCCCTCCCTACATATA
AAAAGGCTAATGTAGAGGCACCATGAATTCAAGGCTGTCTGGGCCATGGA
ACGAAACCCTGTCTCATAACTCAGGAGGTGTAAAGATGGCTCTTCCATTA
CGAGCTTTTCTGGATAACCTATGCTGAGTTTCCCCCCCCCTTTTGTTTAC
CTCACCCATATCCTTATTTCTCCCTGGTCCTACGAACTTCCCTTTCGGCG
TTCTTTTCTATTCTTTCCTACTGGATTTTCCGGACCGAATCGATGATTGC
TCCATTTATTCCTCTTAGGCCTTGTTTTTCTTTTCTGTCTCTTTACCCTC
CTTTTGGTCTTTTACTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_d10.g1 MSMg01no461_d10.g1 CHROMAT_FILE:
MSMg01no461_d10.g1 PHD_FILE: MSMg01no461_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:44 2005
         (328 letters)



>mm_chr7_63100303_63101030
          Length = 728

 Score =  565 bits (292), Expect = e-165
 Identities = 319/328 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagcatcaataagtgaaaatgtataacacttggaatgcaatcggtgttacagaaactccg 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gagcatcaataagtgaaaatatataacacttggaatgcaatcggtgttacagaaactccg 377

                                                                       
Query: 61  attcaaacaaaagaggctaaagtcggggcagaatgcttcagtacacatacagttgtatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 attcaaacaaaagaggctaaagtcggggcagaatgcttcagtacacatacagttgtatat 317

                                                                       
Query: 121 acttctgaactatttaaaaaattgttgaggtggtatttgtaaattttctcacctttaaaa 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 316 acttctgaactatttaaaaaattgttgaggtggtgtttgtaaattttctcacctttaaaa 257

                                                                       
Query: 181 gtactatttcaggctaggttgtatcttatttctgtaatgtcagcactcaaggagcttata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 256 gtactatttcaggctaggttgtatcttatttctgtaatgtcagcactcaaggagctgaga 197

                                                                       
Query: 241 tttacaggaaaggtggcggtatccacacctccagtcttatcactcataaggtggaggcag 300
           |  ||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 196 tagacaggaaaggtggtggtatccacacctccagtcttagcactcagaaggtggaggcag 137

                                       
Query: 301 gagaatcaggggttcaagcccaccagga 328
           ||||||||||||||||||||||||||||
Sbjct: 136 gagaatcaggggttcaagcccaccagga 109


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)