BAC Information

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BAC

Clone NameMSMg01-461G18
Chromosome7 (Build37)
Map Location 11,113,437 - 11,113,951
singlet/doubletsinglet
Overlap geneEG628580
Upstream geneLOC100042859, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1
Downstream geneV1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461G18.T7 (MSMg01no461_g18.b1)MSMg01-461G18.TJ (MSMg01no461_g18.g1)
ACCAG546548AG546549
length751743
length of high quality
(start - end)
509 (64 - 572)514 (79 - 592)
definitionCHROMAT_FILE: MSMg01no461_g18.b1 PHD_FILE: MSMg01no461_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:00 2005CHROMAT_FILE: MSMg01no461_g18.g1 PHD_FILE: MSMg01no461_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:00 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAAGCGCGGAATTCCA
ATTGTTTTCTGTGATAAGAAAATTATTTTGATTGCCAGATTCCGGAAATC
CATCTTCGATTGGGCTTGATTCTCTTTAATTGTGGCTACACCCATTTTTC
TAATCCAAATGAATGAAAAATATTAATAATCTGAAGAGTTCCTCATTGGC
TAAATCAGATGGTTCCATAGAGGTTAGGAATATAATGTCAGAATAGACTA
CATAAGGAGAGATTTTTAACATTTCTTACATTAGCACTAATAACTTACAG
TATTGTAATATTGTTTATAGGCCCAAGGATACACATAGAGACATGCCTTC
ATAATCTTAGAATATTCATCATTAAGGGAAATGTTATATGGCCTCTGAGA
AGAAATAAAAGTAAAAAGTCAGTACTAACAAGCATAATTCTATTCTATAA
GAATATACCAGTAACTCCTACTCATGATGTATATGATGCAAATTTTAATG
ACTATAGCAAAACTCAAAAATATCAATTCTCATCTAATAGTAAGTGGAGG
GGATTGAAAAATTAATAATACCATTTAGAATATATCTATGGGGATATATA
AAACAATTTTGATAAAAGCATAAGAGAAATCTCAATGATGGTTTGAGTGA
ACAATTTGTACTTATTAAATAAAAACTATTGGTTTATGCCAATCTTTATA
CCATTTTATTACCTTTTTGTGTGCCCCCCTCCGTCTGGTTTGTTTAAAAA
G
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGGCTTCAAGGATTTTCTAG
GAACCATTGGAACACTGGTGGAGGTTTAGCTATGTCAAAAATCAATCCTT
AAAGGCACTTATAATAAAACAATACCAAAAGAGAGCACATGGATTCATAC
ATCAGATTAAAGCAGGGACAGGGTCTGAATATTCGGGCTATGGGAATGCC
AAAGTTCCAGGATGCATACTTTCCTTGAAACGCTTCGCCTGGTGACTGCT
TTCAGGCCCTTAGGTCTACCAAGCAGACTACACTGGAGTGGATGTAGCAA
CACAACAATTAAAAACAATGACTTCATGAAATTCACAGGCAATTGGATGG
AACTATAAAATATCATCTTGAGTGAGGTAACACAGATACAAAAGATCACA
CATGGTATGTACTTACTAATAAGTAGATATTAGACCAAAAGCTCACAATG
CTAGTGATACAACCCACAGACCATATGGAGCATAGAAGGAAGGAAGATGC
TTTGGATGCTTCAGTCCTTTATTGAGGGGGAAACAGGATGATTGTGGGAG
GTAGAAAGGACATTTTCCTTTTTTTTCCTTCTTTTTACCTTTCTTCCTCC
TCTTCTTTCTATCCTCTTTACCCCTTTCTCTTTTCTGTTCTTTCACTCTC
TTTTCTCCTCTCTATTCGTCCTGCCCTCTCTTTTCTTTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_g18.b1 MSMg01no461_g18.b1 CHROMAT_FILE:
MSMg01no461_g18.b1 PHD_FILE: MSMg01no461_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:00 2005
         (509 letters)



>mm_chr7_11113243_11114151
          Length = 909

 Score =  586 bits (303), Expect = e-171
 Identities = 465/525 (88%), Gaps = 26/525 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataagaaaattattttgattgccagattccggaaatccatcttcgattggg-cttgattc 59
           ||||||||| |||||||||| ||| ||||| ||||||||||||||| |||| | ||||||
Sbjct: 195 ataagaaaagtattttgattcccatattccagaaatccatcttcgactgggtc-tgattc 253

                                                                       
Query: 60  tctttaattgtggctacacccatttttctaatccaaatgaatgaaaaatattaataatct 119
           ||||||||| |||||||||||| |||||||| ||||||||||||||| | ||||||||||
Sbjct: 254 tctttaattatggctacaccca-ttttctaacccaaatgaatgaaaagtgttaataatct 312

                                                                       
Query: 120 gaagag-ttcctcattggctaaatcagatgg--ttccatagaggttaggaatataatgtc 176
           |||||| || |||||||||||||||||||||  |  || || ||||||||||||||||||
Sbjct: 313 gaagagctt-ctcattggctaaatcagatgggat--cacagtggttaggaatataatgtc 369

                                                                       
Query: 177 agaatagactacataaggagagatttttaacatttcttacattagcactaataacttac- 235
           ||||||||||| ||||| |||||| |||||||||||| |||||||||||||| |||||| 
Sbjct: 370 agaatagactatataagaagagatgtttaacatttctgacattagcactaattacttaca 429

                                                                       
Query: 236 ------agtattgtaatattgtttataggcc-caaggatacacatagagacatgccttca 288
                 |||||||||| ||||  || ||||| | |||| |||||||||||||||||||||
Sbjct: 430 gtacatagtattgtaagattg-gtaaaggcctc-aggacacacatagagacatgccttca 487

                                                                       
Query: 289 taatcttagaatattcatcattaagggaaatgttatatggcctctgagaagaaat-aaaa 347
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct: 488 taatcttagaatattcatcattaagggaaatgttatatggcctgtaagaagaaatgaaaa 547

                                                                       
Query: 348 gtaaaaagtcagtactaacaagcataatt--ctattctataagaa-tataccagtaactc 404
            || |||| || || |||||| |||||||  |||||||||| ||| ||||||||||| | 
Sbjct: 548 -tagaaagccactaataacaaacataatttcctattctata-gaaatataccagtaattt 605

                                                                       
Query: 405 ctactcatgatgtatatgatgcaaattttaatgactatagcaaaactcaaaaatatcaat 464
           |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 606 ctactcatgatgtatatgatgcaaatttta-tgaatatagcaaaactcaaaaatatcaat 664

                                                        
Query: 465 tctcatctaatagtaagtggaggggattgaaaaattaataatacc 509
           |||| ||||| ||||||||||| ||| ||||||||||||||||||
Sbjct: 665 tctcgtctaacagtaagtggagaggaatgaaaaattaataatacc 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)