BAC Information

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BAC

Clone NameMSMg01-461O16
Chromosome7 (Build37)
Map Location 28,091,626 - 28,091,864
singlet/doubletsinglet
Overlap geneLtbp4
Upstream geneCyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199, Cyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl
Downstream geneShkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4, LOC100043774, 9530053A07Rik, Fbl, Dyrk1b, Eid2, LOC434156, BC089491, Dll3, Timm50
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461O16.T7 (MSMg01no461_o16.b1)MSMg01-461O16.TJ (MSMg01no461_o16.g1)
ACCAG546926AG546927
length790782
length of high quality
(start - end)
239 (73 - 311)340 (71 - 410)
definitionCHROMAT_FILE: MSMg01no461_o16.b1 PHD_FILE: MSMg01no461_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:42 2005CHROMAT_FILE: MSMg01no461_o16.g1 PHD_FILE: MSMg01no461_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCCGCGGAATT
CCCTATGATATCCCCAAGATATAGGCCCACCTTATCAGAGTCTCCCCTAT
GGGCCAGATCTGTATCCACCGCCAGTGCTACCTTACGACCCCTACCCACC
CCCACCTGGACCCTTTGCTCGCCGGGAGGCCCCTTATGGCGCCCCACCCT
TCGACATGCCGGACTTTGAGGATGATGGTGGCCCCTATGGCGAGTCTGAG
ACTCCTGACCCACCTAGCCGAGGCACTGGTTGGCCTTATCGGTCCAGAGA
CACCCGTGGCTCCTTCTCAGAGCCTGAGGAATCCTCTGAGCGTGGAAGCT
ATACAGGTGAGCAGTTAGTTCTGCCAGAGAAACCAAACAGATGGACAAAA
CCAAAAACAACACACACACACAAGATGGGAGATGTCGAGAGAAAAGGTAG
AAGGTAATACAGGGGCACAAATATACAAGAGCACCTGGAAAGCTAGGATG
TTGGCGACTCCTGTGGTTAATCCCCAGTCTTATGAGGCCAAGAGGCCAGG
CCCTACCAAAGTGCCCCCCTCCTGTCTAAGAATGGTTAAATACTGTTCTC
TCTTGAAATCCTCCTCTACACTCTCTGTTCTAACCTACCCGCCCCCTTTC
TCTTCCTTATTTCTAACCCCCCTTGTCTGCTTTTTATCTTCTTCTTAGCG
CTTTCTGCTTTCCTACTCTCCCTTTCCCCGCCCTTTATTCCCACTTAATT
TTCCTACCCGATCCAACCATTCTTCCTTTTTTTTCTTCTC
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGGCCAGCCAAAGCTACATAGTGAGACCC
TGTCTCAAATACATAAATATTCATGAAATCTTAAGTAAATAACCTATGGA
TGTACCTCAAAGTCTTACAAAATCAAGAGTGAGTCTAATCAACCAGTAAT
GGGCTGGGTGCATTATTGGTAACTATACTTTTTTGCCTAGAACCTAACAG
TGAGAGGTTGGAGGCGTGGCTCAGTGGTAGAACACTTGCCAGGAATCCCG
CAGTGAGGGGCTGTTTTTGTGGCTCAGTGGTAGAACTTTTATCAGTTGGT
TGTTTAGCATATATAAGGCTTTAGATTTGATCTCCAGAATCAAAAACGGA
AAAAAGGGGGGAAAAAAGAATAAGGAAGGAAGGAAAGAAAGAAGGAAGGA
AAGAGAGAGCGAGGCAGTTTGTTTTCCTTATCCTTTATATACAATACTTT
TTTTTCATATTATCTTCCACTTACTATCTTTCCCTTCTATTTTTTTTCCT
CCACCCTCATTCTTTTTTTCCTCCTTTTCTTTTTTTCTTTTTCCCCTAAC
CTCGTTTCTACCCGTGTCACTCCCTTACTCCCATTCACTTCCTCTTTTTA
TTTTTTTTATTCCCCTTCCCACTTTTTTATTTTCTTCTTTTTCTACTCTT
TTTTCTCTCCTCCATTATTTTACCTCCCACTTTTTTCCTTCCTTATTTTC
GTGCTTATCTCTTTTCTTTTTTCCCTCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_o16.b1 MSMg01no461_o16.b1 CHROMAT_FILE:
MSMg01no461_o16.b1 PHD_FILE: MSMg01no461_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:42 2005
         (239 letters)



>mm_chr7_28091426_28092064
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcccaccttatcagagtctcccctatgggccagatctgtatccaccgccagtgctacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aggcccaccttatcagagtctcccctatgggccagatctgtatccaccgccagtgctacc 380

                                                                       
Query: 61  ttacgacccctacccacccccacctggaccctttgctcgccgggaggccccttatggcgc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctacgacccctacccacccccacctggaccctttgctcgccgggaggccccttatggcgc 320

                                                                       
Query: 121 cccacccttcgacatgccggactttgaggatgatggtggcccctatggcgagtctgagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cccacccttcgacatgccggactttgaggatgatggtggcccctatggcgagtctgagac 260

                                                                      
Query: 181 tcctgacccacctagccgaggcactggttggccttatcggtccagagacacccgtggct 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tcctgacccacctagccgaggcactggttggccttatcggtccagagacacccgtggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)