BAC Information

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BAC

Clone NameMSMg01-462A24
Chromosome7 (Build37)
Map Location 70,765,968 - 70,766,436
singlet/doubletsinglet
Overlap geneOtud7a
Upstream geneEG665038, LOC669222, LOC384631, LOC622243, EG622251, Chrna7, LOC545971, LOC100041386
Downstream geneLOC665083, Klf13, E030018B13Rik, Trpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462A24.T7 (MSMg01no462_a24.b1)MSMg01-462A24.TJ (MSMg01no462_a24.g1)
ACCAG547038AG547039
length758754
length of high quality
(start - end)
244 (84 - 327)469 (81 - 549)
definitionCHROMAT_FILE: MSMg01no462_a24.b1 PHD_FILE: MSMg01no462_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:55 2005CHROMAT_FILE: MSMg01no462_a24.g1 PHD_FILE: MSMg01no462_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTTTTTACTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAN
AAATCCGCGGAATTCATTGTTTTTACCAACTGAGTAGTACTCCATTGTGT
ACTCTAGTTCCAGCCATTTGCCTAATAACTTCATAAATTCATTGTTTTTA
ATAGCTGAGTAGTACTCCATTGTGTACATGTACCACATTTTCTGTATCCA
TTCCTCTGTTGAAGGATATCTGGGTTCTTTCCAGTTTCTGGCTATTATAA
ATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTAGTACATGTTAGA
GCATCTTCTGGATATATGCCCAGGAGTGTTATATCTGGGCCCTTAGGGAG
TACTATGTCCAGTTTTCTGAGGAACCACCAAAGTGATTTCCAGAGTGGTT
GTACCAGCTTGTAATCCCATCAGCAGTGGAGGCACATTTCTCTTTCTCCA
CATACTCGCCAGCATCTGCTGTCATCTGAGTTTTTGATCTTAGCCATTCT
GACTGGTGTGAGATGGAACCTCAGGGTTGGTTTTGATTTAAATTTCCCTG
AAGATTAGGGAAGTTGAAAAATTCCCTTCAGGTGGTTTCCCCACCCAATT
CAGAAATTCCCCCCCTTGGGAAAGCCTCTTTTGTTAAAACTCTGGGACCC
CCCTTTTTTTTAAAAAAGGGATATTTTTGTTCTTTCTTTGAGAAACAAAA
CCCCCCTTGGGAAGTTCCTTTGGTAAAATTTGGGGAAAAATAAAACCCCC
CCTCTTCG
NNNTTTCGATGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGACAGAATCACCCAGCA
GCACATTTTAAATCTTCATTTCACATATTCATTCAGAAGAGAGCCAAGCA
GAAGGCAAATCGTCTGGGCGAAGGCGCTTTTGAGTAGCTAAGCTATATAT
AGTCAGAAAAGAAAGCCTAGGTGTAGGACACTAAGTTAAACCACTTCTAC
AGAGAAATATAAACCATTTGAGGTTGCTTTTTATTAGGCAATAAAAATCA
TAATTATCCATTTCTACAGCAGCCCTCTGACTTTTGAATTTTTATCAGAG
GTGAATCATTAAATATTTATGATGCTTTTCAAGAGTTATAGAATAAGATC
AAGCAGGCTTACCAGCTTATATTGGAGCAGGATATCAAAGTGTTAAGAAA
TCTGAATTTCCCTCTTTCTGCTAACTGGGGTATTAATTTTTGGGTAACAG
GTAAAATATGGTGGCTGCTAAGTGATAAGGTACCGTGTAATATTCTTAGG
TGCCTTTAGCCTGCATGGTGAACTTGATTCAGAGTGTGGATATTCTGGGA
GTCAGCAGCTGGCAAGGATCCCCAAAATTTCTGGCTCCTTATACTATTCT
GTGGCAGGGGCCCAGGGACTGGGCCTTGGGAAAAAAAAGGTGAAGGTTGG
CCCCAGGATGAGGGCCTCCCCCCTGGGGGAAACTCTCTTCTCCAGCCCCG
CCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_a24.g1 MSMg01no462_a24.g1 CHROMAT_FILE:
MSMg01no462_a24.g1 PHD_FILE: MSMg01no462_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:55 2005
         (469 letters)



>mm_chr7_70765768_70766636
          Length = 869

 Score =  876 bits (453), Expect = 0.0
 Identities = 465/469 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagacagaatcacccagcagcacattttaaatcttcatttcacatattcattcagaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagacagaatcacccagcagcacattttaaatcttcatttcacatattcattcagaaga 260

                                                                       
Query: 61  gagccaagcagaaggcaaatcgtctgggcgaaggcgcttttgagtagctaagctatatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagccaagcagaaggcaaatcgtctgggcgaaggcgcttttgagtagctaagctatatat 320

                                                                       
Query: 121 agtcagaaaagaaagcctaggtgtaggacactaagttaaaccacttctacagagaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcagaaaagaaagcctaggtgtaggacactaagttaaaccacttctacagagaaatat 380

                                                                       
Query: 181 aaaccatttgaggttgctttttattaggcaataaaaatcataattatccatttctacagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaccatttgaggttgctttttattaggcaataaaaatcataattatccatttctacagc 440

                                                                       
Query: 241 agccctctgacttttgaatttttatcagaggtgaatcattaaatatttatgatgcttttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccctctgacttttgaatttttatcagaggtgaatcattaaatatttatgatgcttttc 500

                                                                       
Query: 301 aagagttatagaataagatcaagcaggcttaccagcttatattggagcaggatatcaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagagttatagaataagatcaagcaggcttaccagcttatattggagcaggatatcaaag 560

                                                                       
Query: 361 tgttaagaaatctgaatttccctctttctgctaactggggtattaatttttgggtaacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttaagaaatctgaatttccctctttctgctaactggggtattaatttttgggtaacag 620

                                                            
Query: 421 gtaaaatatggtggctgctaagtgataaggtaccgtgtaatattcttag 469
           |||||||||||||||||||| |||| ||||||||| ||| |||||||||
Sbjct: 621 gtaaaatatggtggctgctaggtgagaaggtaccgggtagtattcttag 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)