BAC Information

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BAC

Clone NameMSMg01-462D21
Chromosome7 (Build37)
Map Location 147,161,455 - 147,312,476
singlet/doubletdoublet
Overlap gene6430531B16Rik, Adam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox
Upstream gene6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2, Inpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869, Gpr123, LOC244229, Kndc1, Utf1, LOC100039095
Downstream geneMtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462D21.T7 (MSMg01no462_d21.b1)MSMg01-462D21.TJ (MSMg01no462_d21.g1)
ACCAG547176AG547177
length757750
length of high quality
(start - end)		507 (52 - 558)473 (78 - 550)
definitionCHROMAT_FILE: MSMg01no462_d21.b1 PHD_FILE: MSMg01no462_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:11 2005CHROMAT_FILE: MSMg01no462_d21.g1 PHD_FILE: MSMg01no462_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:12 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(147,311,979 - 147,312,476)(147,161,455 - 147,161,927)
sequence
NNNGGAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCGGGTCCTCTCTATCAGTCCATAGAACAGATGGGCCAT
CTCTGTCATCAGCTCCAGGCTCACACTTGTTCCAGAGCTGGACCAGATCA
TGGAGGGCAGGGCCACGTGCCCTCCTGTATCCACAAGCTGGTTCTCTTCC
GATAATTCTTTCTCCCCCAGGAGCCCGAATTCTGCAGCCAGCTGGAAGAC
AGGATTGTCCTGGGAGGGCCCATGGATCCAGTGTGCACCCAGCTCCACTA
CACCACCTAGGAGGGCACAGGAAATGCTACCTGGAGGCCCTCTCCCCAGA
AAAAGCAGCCCCGCCCTTTCGCAAGCATACTCTAGGAACACCTTGAGAGT
CACATGGTCCCCTTGTATACCAGGACCAAGGGTCCTGTTCCTCAGGGTAA
AGTAGTTCCTAAAGGCATGGCTTGGTCAGACCAGATTTCGGGAACTCCTG
GGGAGGGGCGAGATAGCCTGTACAGGCTTCCTTCACTTAAGGAGAAACCC
GATGAACCCCAAAGCTGAGCAAAGCAACTGCGGGACCCTAAGTTGCCTTC
CCTAGAGAGAACTCTCCTAACTTTAGGCAGTTGACTTTTCAGGCTCATTG
AAGGGAGAGTGTGGTCCTTTTCTCCCGGGAAGCAAAAAAGAGAAGGTTCC
TGGTTCATATAAAACCGTATGGGGCCTGGTGCCAACCAAGAACGGTTACA
AAACAAG

NCCCTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGAACGCTAGACTGGACTC
AGATTCACAGACATCCATCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAG
CCTGATGAATCACCATTGCAAGGCCACTGACTAATTTCTAAAGAATCTAA
AGAATGTCTAAAGAATGTTGACTCTCTCTGGTCAGGGCCCTGCACTCCCT
ATACTGCCCTCACTGGGCCAGTGCTGGCTCTTCAGAAACTCAGCCAAGGA
GTGTGAAGCTGGGGCAGTGGGTCTCTCTGCATCCTTGCAGCTCAGAATCT
CCGGGAAGCAAGGGATGCCCAGTAGGACCATACCTTGACCGTCTCCTGCA
GAATGGCTAGTGCTTGCTCCTTATCCTCCAGCTGCTGCTGGATGCTGACC
AGGTGATCCCAGAGCCCTTCAATTGAGTCCCTGAAAGGTAAACACTGACC
TTTAGTCCAGGCTAGGGAGCAGAAGGAGGTGGGCGGTGAGAATTTGAGAG
ATAAAGGTCCACCCTCTGCAAGCACAGCAGCCCATTTTCTCCAAATCCCT
TTGATTCTGAAAGATCTTCATGCTGGAGGGGGCTGGAGGGCTCTGTAAGC
CTGTATGACAAAAAACACCATCAGCTTAGGACTTTGCTTCTGATAAGTAC
CCACTAATGTTAGGAACTAACATTTGTACCAATGGAGGGGTATTGGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_d21.b1 MSMg01no462_d21.b1 CHROMAT_FILE:
MSMg01no462_d21.b1 PHD_FILE: MSMg01no462_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:11 2005
         (507 letters)



>mm_chr7_147311776_147312682
          Length = 907

 Score =  932 bits (482), Expect = 0.0
 Identities = 494/498 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcgggtcctctctatcagtccatagaacagatgggccatctctgtcatcagct 63
           ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 701 ggaattctcgggtccgctctatcagtccatagaacagacgggccatctctgtcatcagct 642

                                                                       
Query: 64  ccaggctcacacttgttccagagctggaccagatcatggagggcagggccacgtgccctc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ccaggctcacacttgttccagagctggaccagatcatggagggcagggccacgtgccctc 582

                                                                       
Query: 124 ctgtatccacaagctggttctcttccgataattctttctcccccaggagcccgaattctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctgtatccacaagctggttctcttccgataattctttctcccccaggagcccgaattctg 522

                                                                       
Query: 184 cagccagctggaagacaggattgtcctgggagggcccatggatccagtgtgcacccagct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cagccagctggaagacaggattgtcctgggagggcccatggatccagtgtgcacccagct 462

                                                                       
Query: 244 ccactacaccacctaggagggcacaggaaatgctacctggaggccctctccccagaaaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ccactacaccacctaggagggcacaggaaatgctacctggaggccctctccccagaaaaa 402

                                                                       
Query: 304 gcagccccgccctttcgcaagcatactctaggaacaccttgagagtcacatggtcccctt 363
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gcagccccaccctttcgcaagcatactctaggaacaccttgagagtcacatggtcccctt 342

                                                                       
Query: 364 gtataccaggaccaagggtcctgttcctcagggtaaagtagttcctaaaggcatggcttg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gtataccaggaccaagggtcctgttcctcagggtaaagtagttcctaaaggcatggcttg 282

                                                                       
Query: 424 gtcagaccagatttcgggaactcctggggaggggcgagatagcctgtacaggcttccttc 483
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 281 gtcagaccagatttcgggaactcctggggaggggcgagacagcctgtacaggcttccttc 222

                             
Query: 484 acttaaggagaaacccga 501
           ||||||||||||||||||
Sbjct: 221 acttaaggagaaacccga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no462_d21.g1 MSMg01no462_d21.g1 CHROMAT_FILE:
MSMg01no462_d21.g1 PHD_FILE: MSMg01no462_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:12 2005
         (473 letters)



>mm_chr7_147161255_147162127
          Length = 873

 Score =  891 bits (461), Expect = 0.0
 Identities = 470/473 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgaacgctagactggactcagattcacagacatccatctgcctctgcctcccgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgaacgctagactggactcagattcacagacatccatctgcctctgcctcccgagt 260

                                                                       
Query: 61  gctgggattaaagcctgatgaatcaccattgcaaggccactgactaatttctaaagaatc 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 gctgggattaaagcctgatgaatcaccattgctaggccactgactaatttctaaagaatc 320

                                                                       
Query: 121 taaagaatgtctaaagaatgttgactctctctggtcagggccctgcactccctatactgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaagaatgtctaaagaatgttgactctctctggtcagggccctgcactccctatactgc 380

                                                                       
Query: 181 cctcactgggccagtgctggctcttcagaaactcagccaaggagtgtgaagctggggcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcactgggccagtgctggctcttcagaaactcagccaaggagtgtgaagctggggcag 440

                                                                       
Query: 241 tgggtctctctgcatccttgcagctcagaatctccgggaagcaagggatgcccagtagga 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggtccctctgcatccttgcagctcagaatctccgggaagcaagggatgcccagtagga 500

                                                                       
Query: 301 ccataccttgaccgtctcctgcagaatggctagtgcttgctccttatcctccagctgctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccataccttgaccgtctcctgcagaatggctagtgcttgctccttatcctccagctgctg 560

                                                                       
Query: 361 ctggatgctgaccaggtgatcccagagcccttcaattgagtccctgaaaggtaaacactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggatgctgaccaggtgatcccagagcccttcaattgagtccctgaaaggtaaacactg 620

                                                                
Query: 421 acctttagtccaggctagggagcagaaggaggtgggcggtgagaatttgagag 473
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 acctttagtccaggctagggagcagaaggaggtgggcggggagaatttgagag 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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