BAC Information

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BAC

Clone NameMSMg01-462E07
Chromosome7 (Build37)
Map Location 99,066,591 - 99,236,811
singlet/doubletdoublet
Overlap geneDlg2
Upstream genenone
Downstream geneCcdc90b, Ankrd42, Pcf11, LOC676240, LOC100040007, 4632427E13Rik, Rab30, 4632434I11Rik, Prcp, A830059I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462E07.T7 (MSMg01no462_e07.b1)MSMg01-462E07.TJ (MSMg01no462_e07.g1)
ACCAG547196AG547197
length749769
length of high quality
(start - end)
629 (44 - 672)481 (72 - 552)
definitionCHROMAT_FILE: MSMg01no462_e07.b1 PHD_FILE: MSMg01no462_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:14 2005CHROMAT_FILE: MSMg01no462_e07.g1 PHD_FILE: MSMg01no462_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,066,591 - 99,067,215)(99,236,394 - 99,236,811)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGAA
TTCCATAAACATTTCGCCACTGCCTTCAAAAACTTGCTTGTCCAATGAGC
TATCTTTAGTCTAAATGTATTTTTAAAAAAATTACATTGGGCAGCCTGCT
TCCTTCCTGCCGCCCACTTTCTCCCTCACAAAAAAAATAAAATAAAATAA
AATCATCCTAGCCTTAAGATCTTATTTGAATTTTTCTGACTTTTTCATCC
TCTCAGCCATTATTTCAACAAGGATGGTCATCCCCATATTAAAAAGCACT
CTGATGTTGCTCAGAAGTCATAAGACAGGGCAAAAGGATGCCCACCCCAC
CGACACTCCTTATTTCTGGTAGAGAGGAAAGTGAGACTTTGCTCCCACTC
AGATTAGCAACTTCGTCCTTTAGCTTGGCCATCCCAGTGGTGTTTCTAGC
CAAGAGAGAGGCCTGATATTTTCCAAAGACTCTTGTGTACAACCATCCTT
CTTACAGTTCTACTCACTAAGCATGTATTACAGGATTAAAGTCAGACGAA
GCACTGTGGAGTTAGGGTGCATTTTATTATGTTGTCCTCCCTCCACATTT
CTTACGAAGAGACACTTAATACGGTTGATGCACAGTGGATGTGTCCCATT
TAGTTTTGCTATTTTCATTTGGTTAGNTTGGGTCATAGAAATGGCTGCTT
TGGAATATTTTTTAGTGAGTTTCACCTGTGACTATTGGTGGTCTCCATN
GATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCATCACAACTATCAACATCCTATGTACC
ACCATTCCTGAAACACCAGTTTTTCTCTGTTAAAAAAAAAAAAAAGAGTT
GTGGCTGGAGAGATGGCTCAGAAGTTAAGAGCATTGACTGCTCTTCTAGA
TGTCTGGAGTTCAATTCCCAGCAGCTACATGGTGGCTCACAATTATCTGT
AATAGGATTCGATGCCCTCTTCTGGTGTGTCTGAAGATAGGAACAATATA
CGCATATACATAAAATAAATAATTATTAAAAAAACCCTCTGTAATAGTAT
TGATCATAAAGTATTCAGCAGACTGGAAAGGCTAAGAAATAAAGGGGAGA
TTTTGATCTGAGAGGAATCAGATTGAACCTTGCAGGCAGTGGAATGTCCT
AGAATCTGAGTCACCAAGAGTATTTAAATGAAGAAGATTAGCCAGTGGTC
ACACATACTGTTGTCATCTAAGAAACCCAGGTGTGAAAGAGTGACAGCTG
GAGAAAGATTGACAACAGNGAGGATGAANAANAAGGAGAGAGGAGAGGAG
ACTATGAAAAGGGGTGAGGTGTTGTNNNTTTTTTTTNTTTGTTTTTTTTT
GTTTNTTTTTTTTTTNNTTTNTGTTNNNTTTTTGGTTTGGTTAANTATGT
TATTTNGTNTTTTTTTTTTNGNTTGTTTTTTTTATTGAGATTATTTGAGT
ATTTATGTANNNATTTNTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_e07.b1 MSMg01no462_e07.b1 CHROMAT_FILE:
MSMg01no462_e07.b1 PHD_FILE: MSMg01no462_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:14 2005
         (629 letters)



>mm_chr7_99066387_99067415
          Length = 1029

 Score = 1154 bits (597), Expect = 0.0
 Identities = 618/625 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccataaacatttcgccactgccttcaaaaacttgcttgtccaatgagctatcttt 64
           ||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattccattaacatttggccactgccttcaaaaacttgcttgtccaacgagctatcttt 264

                                                                       
Query: 65  agtctaaatgtatttttaaaaaaattacattgggcagcctgcttccttcctgccgcccac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtctaaatgtatttttaaaaaaattacattgggcagcctgcttccttcctgccgcccac 324

                                                                       
Query: 125 tttctccctcacaaaaaaaataaaataaaataaaatcatcctagccttaagatcttattt 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttctccctcacaaataaaataaaataaaataaaatcatcctagccttaagatcttattt 384

                                                                       
Query: 185 gaatttttctgactttttcatcctctcagccattatttcaacaaggatggtcatccccat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaatttttctgactttttcatcctctcagccattatttcaacaaggatggtcatccccat 444

                                                                       
Query: 245 attaaaaagcactctgatgttgctcagaagtcataagacagggcaaaaggatgcccaccc 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 attaaaaagcactctgatgttgctcagaagtcagaagacagggcaaaaggatgcccaccc 504

                                                                       
Query: 305 caccgacactccttatttctggtagagaggaaagtgagactttgctcccactcagattag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caccgacactccttatttctggtagagaggaaagtgagactttgctcccactcagattag 564

                                                                       
Query: 365 caacttcgtcctttagcttggccatcccagtggtgtttctagccaagagagaggcctgat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caacttcgtcctttagcttggccatcccagtggtgtttctagccaagagagaggcctgat 624

                                                                       
Query: 425 attttccaaagactcttgtgtacaaccatccttcttacagttctactcactaagcatgta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attttccaaagactcttgtgtacaaccatccttcttacagttctactcactaagcatgta 684

                                                                       
Query: 485 ttacaggattaaagtcagacgaagcactgtggagttagggtgcattttattatgttgtcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttacaggattaaagtcagacgaagcactgtggagttagggtgcattttattatgttgtcc 744

                                                                       
Query: 545 tccctccacatttcttacgaagagacacttaatacggttgatgcacagtggatgtgtccc 604
           ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 745 tccctccacatttcttatgaagagacacttaatatggttgatgcacagtggatgtgtccc 804

                                    
Query: 605 atttagttttgctattttcatttgg 629
           |||||||||||||||||||||||||
Sbjct: 805 atttagttttgctattttcatttgg 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no462_e07.g1 MSMg01no462_e07.g1 CHROMAT_FILE:
MSMg01no462_e07.g1 PHD_FILE: MSMg01no462_e07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:14 2005
         (481 letters)



>mm_chr7_99235931_99236811
          Length = 881

 Score =  754 bits (390), Expect = 0.0
 Identities = 411/418 (98%)
 Strand = Plus / Minus

                                                                       
Query: 64  aaaaaaaaaaagagttgtggctggagagatggctcagaagttaagagcattgactgctct 123
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||
Sbjct: 881 aaaaaaaaaaagagttgtggctagagagatggctcagaagttaagagcattgacggttct 822

                                                                       
Query: 124 tctagatgtctggagttcaattcccagcagctacatggtggctcacaattatctgtaata 183
           |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 821 tctagatgtccggagttcaattcccagcaactacatggtggctcacaattatctgtaata 762

                                                                       
Query: 184 ggattcgatgccctcttctggtgtgtctgaagataggaacaatatacgcatatacataaa 243
           |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 761 ggattcaatgccctcttctggtgtgtctgaagataggaacaatgtacgcatatacataaa 702

                                                                       
Query: 244 ataaataattattaaaaaaaccctctgtaatagtattgatcataaagtattcagcagact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ataaataattattaaaaaaaccctctgtaatagtattgatcataaagtattcagcagact 642

                                                                       
Query: 304 ggaaaggctaagaaataaaggggagattttgatctgagaggaatcagattgaaccttgca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ggaaaggctaagaaataaaggggagattttgatctgagaggaatcagattgaaccttgca 582

                                                                       
Query: 364 ggcagtggaatgtcctagaatctgagtcaccaagagtatttaaatgaagaagattagcca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ggcagtggaatgtcctagaatctgagtcaccaagagtatttaaatgaagaagattagcca 522

                                                                     
Query: 424 gtggtcacacatactgttgtcatctaagaaacccaggtgtgaaagagtgacagctgga 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gtggtcacacatactgttgtcatctaagaaacccaggtgtgaaagagtgacagctgga 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)