BAC Information

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BAC

Clone NameMSMg01-463F20
Chromosome7 (Build37)
Map Location 76,798,864 - 76,799,308
singlet/doubletsinglet
Overlap genenone
Upstream geneArrdc4, LOC384741, EG665410
Downstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463F20.T7 (MSMg01no463_f20.b1)MSMg01-463F20.TJ (MSMg01no463_f20.g1)
ACCAG548034AG548035
length751749
length of high quality
(start - end)
591 (78 - 668)607 (80 - 686)
definitionCHROMAT_FILE: MSMg01no463_f20.b1 PHD_FILE: MSMg01no463_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:44 2005CHROMAT_FILE: MSMg01no463_f20.g1 PHD_FILE: MSMg01no463_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATC
CGCGGAATTCTCACCTGATTACTACCGAATGGCAGAGAAGCACCTGAAAA
AATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG
AGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTC
CTCAGAAAACTGGATATAGTACTACCGTATTATCCAGCAATACCTCTCCT
GGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCC
AGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTGG
CCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCA
CAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAA
AACCTAAGATACCCAAGATATAAGATACAATTTCCTAAACACATGAAACT
CAAGAAAAATGAAGACTGAAGTGTGAACACTATGCCCCTCCTTAGAAGTG
G
TTTTTCTATGATANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAAGTGTGAGAGGGAGCTC
TCTATGGAGCAGGTATATATTGAACAGGCCTTTTAACCATCACAACCGAT
TAATGCAACTAATTACTGGGCTAGTATATATAGTCAATTAACATTTCTGT
GGAAAACTCTCCAAATATTTAAAAATGTATAATTTCAGCCAGCAATTCAC
ATTTCAAAAATTCCTCTGAGTAAGACAACCCAATGTAAGACTTCACCACA
GTAATATTTATTATGACAGTGATGATAATGTTATAATACATTCTATGTAT
AGCAAATATGGTATTATAATATAGCTAATAATGTAATACATGCTATGTAC
AACATATACTATAATATAGCTAATCATGTAATATATAATATGTATAATAT
ATACTATATAATAATATACCTAATACTAGTTTTCACCCTGTATCAGAGGC
AGTTTATCTTTCTTTTATTTAATAAAATAAATTAATAAATCTGGGATCCA
TACAGATATAGAACATTTAGGTAAATACCACTTGAACTGTTAAAGATGTC
AGTTTACCCAGGCTGCCATAACTGAATGCCCCACAGGGATAGCTAAATAA
AAAGATGTATTTCTAAGTCCAGGAAATGGGGAATCTAAGACCAAGAAACT
GANNAGAACATTTCATCATGAGGACCCTGTTTGCCATTTGTTATCAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_f20.g1 MSMg01no463_f20.g1 CHROMAT_FILE:
MSMg01no463_f20.g1 PHD_FILE: MSMg01no463_f20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:44 2005
         (607 letters)



>mm_chr7_76798864_76799870
          Length = 1007

 Score =  845 bits (437), Expect = 0.0
 Identities = 444/447 (99%), Gaps = 2/447 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttaagtgtgagagggagctctctatggagcaggtatatattgaacaggccttttaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttaagtgtgagagggagctctctatggagcaggtatatattgaacaggccttttaacca 386

                                                                       
Query: 61  tcacaaccgattaatgcaactaattactgggctagtatatatagtcaattaacatttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcacaaccgattaatgcaactaattactgggctagtatatatagtcaattaacatttctg 326

                                                                       
Query: 121 tggaaaactctccaaatatttaaaaatgtataatttcagccagcaattcacatttcaaaa 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggaaaacactccaaatatttaaaaatgtataatttcagccagcaattcacatttcaaaa 266

                                                                       
Query: 181 attcctctgagtaagacaacccaatgtaagacttcaccacagtaatatttattatgacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attcctctgagtaagacaacccaatgtaagacttcaccacagtaatatttattatgacag 206

                                                                       
Query: 241 tgatgataatgttataatacattctatgtatagcaaatatggtattataatatagctaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgatgataatgttataatacattctatgtatagcaaatatggtattataatatagctaat 146

                                                                       
Query: 301 aatgtaatacatgctatgtacaacatatactataatatagctaatcatgtaatatataat 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 145 aatgtaatacatgctatgtacaacatatactataatatagctaatcatgta--atataat 88

                                                                       
Query: 361 atgtataatatatactatataataatatacctaatactagttttcaccctgtatcagagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  atgtataatatatactatataataatatacctaatactagttttcaccctgtatcagagg 28

                                      
Query: 421 cagtttatctttcttttatttaataaa 447
           |||||||||||||||||||||||||||
Sbjct: 27  cagtttatctttcttttatttaataaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)