BAC Information

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BAC

Clone NameMSMg01-463L19
Chromosome7 (Build37)
Map Location 30,577,031 - 30,577,448
singlet/doubletsinglet
Overlap geneZfp30
Upstream gene5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794
Downstream geneEG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463L19.T7 (MSMg01no463_l19.b1)MSMg01-463L19.TJ (MSMg01no463_l19.g1)
ACCAG548318AG548319
length757737
length of high quality
(start - end)		420 (83 - 502)414 (85 - 498)
definitionCHROMAT_FILE: MSMg01no463_l19.b1 PHD_FILE: MSMg01no463_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:16 2005CHROMAT_FILE: MSMg01no463_l19.g1 PHD_FILE: MSMg01no463_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTAAATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGA
GAATCCGCGGAATTCTTTCCATTATTCCCCACGGAGATAGATTAATTTCG
TAAGTATTCTTTTCTGGAAGTAACCCATTACTGCTGTATCTGGATTCCAG
ATCTGAAAGCAAAAAGAAGAAAAACGCATGGTACCGTCCTAATCTGGATG
AAATAAAGAAATAAAAGTAATGAAAACAAGCCTCTAGCTGTCCGCACGCG
GGAGGCAGAGTTAAAAGCTCCAGTTACAGGCCAGCCTGAGCTACGTCACA
AGACTTCGCTCAAGACAAGGAAAAGAAAAGACTTTAATAAGCTGAATGGA
CTTAGCAGCCCCCAAATAATCACGTAATTAAAAAAAAGGTTTAAGAAGGA
TAAGGAAGATGGCATGTCTAGATGCACAATTGAAAATAAAAATGAAGGGT
GAGATGTAATGGCCCGCACACACCTTTAATCCCAGCACTCAGGAGACAGA
GACAGGTGGTTCTCCTGTGAGTCAGGGTCAGCATAATCTATAGAGTGTAT
TTCATTTTCATCCATGGTTACCTAATAAGGTCCAGCCCTTTTTTTTTTTC
TAAACCATACCTACCCTCCTTATTCTTTTTTCCCTTCGTTCATTAATCCC
CCACCTGTATCCCCCCTTCCTTATTATTATCCTTCCTTCTAAATACCATT
TCTTTATATCATCCCCATTTTTTACCTATCTCACCTTCTATCTTTCCTTT
CTCCTAN

TTAATTTTCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAAGCCTGACCTCT
TATACCTTGTTTTCTCCTTGGTCAAAACCATTTAACAATCAACCCTTTTA
TAATGACAAGCATCCGTCATCTGATAAAACAGTGAACAACCAAAACCTAC
CCATCTCACCTTGAGGGAATGGGGTGCTGTGCCCTCAAAGCTCCTTCCTG
TTGATTTGGACCTAAGCATTTCTTTAGGGGGCCCAAGAAGATTGGAAAAA
TGGGTGGCCTTAAGAAAGCTAGATGTAGCATCTGTTGTCCAGTCTCTGTA
CGCTCAGAAAGTTTAGGCGAACATGAAGCCTTGACTGAATCAGGCTGTAA
GGCTGGATGACTTGAGGTCATCTGGGGTCAGCAGCTTTCTTTGAAGCTGT
CCTGGAAGCAAGTCTTTTGAGGAAACAGCATTGAAGCATTCTGAGGTAAG
ATCAGTCAGGAAGCTGGAACAGTAAGTCTCAGCACCCCGGAGGGTGAATC
TTGTCAGAGTGGTTTTCCTGGGTTTATTTTCCGGAAACTAAAAGCTTCTC
ACAAGAACATACCGTTTTTTGATTTGACATAATTGAACCGGCTCCCTCCC
CCTTCTACTTATGAACATCTTCCCTTTTTACGCAGAATATCTCTTTTTTA
TCTAAAAAATTAGTTATCCCCCACACTCTATATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_l19.b1 MSMg01no463_l19.b1 CHROMAT_FILE:
MSMg01no463_l19.b1 PHD_FILE: MSMg01no463_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:16 2005
         (420 letters)



>mm_chr7_30576866_30577685
          Length = 820

 Score =  729 bits (377), Expect = 0.0
 Identities = 408/421 (96%), Gaps = 6/421 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggagatagattaatttcgtaagtattcttttctggaagtaacccattactgctgtatctg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 583 ggagatagattaatttcgtaagtattcttttctggaagtaacccgttactgctgtatctg 524

                                                                       
Query: 61  gattccagatctgaaagcaaaaagaagaaaaacgcatggtaccgtcctaatctggatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gattccagatctgaaagcaaaaagaagaaaaacgcatggtaccgtcctaatctggatgaa 464

                                                                       
Query: 121 ataaagaaataaaagtaatgaaaacaagcctctagctgtccgcacgcgggaggcagagtt 180
           |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ataaagaaataatagtaacgaaaacaagcctctagctgtccgcacgcgggaggcagagtt 404

                                                                       
Query: 181 aaaagctccagttacaggccagcctgagctacgtcacaagacttcgctcaagacaaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aaaagctccagttacaggccagcctgagctacgtcacaagacttcgctcaagacaaggaa 344

                                                                       
Query: 241 aagaaaagactttaata---agctgaatggacttagcagcccccaaataatcacgtaatt 297
           ||||||||||   || |   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aagaaaagac---aacaagcagctgaatggacttagcagcccccaaataatcacgtaatt 287

                                                                       
Query: 298 aaaaaaaaggtttaagaaggataaggaagatggcatgtctagatgcacaattgaaaataa 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aaaaaaaaggtttaagaaggataaggaagatggcatgtctagatgcacaattgaaaataa 227

                                                                       
Query: 358 aaatgaagggtgagatgtaatggcccgcacacacctttaatcccagcactcaggagacag 417
           ||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||
Sbjct: 226 aaatgaagggtgagatgtagtggcccaaacacacctttaatcccagcactcaggagacag 167

            
Query: 418 a 418
           |
Sbjct: 166 a 166


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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