BAC Information

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BAC

Clone NameMSMg01-463M16
Chromosome7 (Build37)
Map Location 26,672,173 - 26,672,359
singlet/doubletsinglet
Overlap genenone
Upstream geneRps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475
Downstream geneCyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463M16.T7 (MSMg01no463_m16.b1)MSMg01-463M16.TJ (MSMg01no463_m16.g1)
ACCAG548360AG548361
length730739
length of high quality
(start - end)		174 (83 - 256)242 (79 - 320)
definitionCHROMAT_FILE: MSMg01no463_m16.b1 PHD_FILE: MSMg01no463_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:20 2005CHROMAT_FILE: MSMg01no463_m16.g1 PHD_FILE: MSMg01no463_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCACGCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGG
ATGCGGCGGAATCTCAAAGATTACACTTTTAAGTGAGGAAAAGTAAATAA
ACTACTGTTTTGTTGGTGGAAATGTGGAAGCACAGAGAGGTTGACACCTT
GCCTCTTAGCCCACTATGGTCTAGAAGTCAGGGGTCAAACCCAGTCTGTT
GCCAAGAGCCTGAAAATGCAGAATGTGAGACAGGCAGACAAACCTGATAA
TAGAGAATTTTGAGAGGCAGACAAAAAAAACAGTGAGAAATGAGGAAAGA
GAGTTCAAGGGGTTCCATGGATGGATAATAATCTCGAGACATGTCTACTA
ACAATACACAGACATCTTGGGCTAGGCATGTGGCTCAGTAGAGAGAGGGA
CTGCCCAGCATGCATGAAGTTCCATCTCCAGCACAGCATAGCCCCGGAAT
GGTGGTTATATAGTGAGTCCTGCGGCAGCCTGAGCTAATGAGACCCTCTC
TCACAAGAAAGACTTATTTGCCCCAGAATGAACACTAGTAGTGGGAATTA
GAAATGGCTTCCTGAAGCCTGTTTTATCTGTCCCCTAAGAGGCTTTGCCT
GCACCTAACCAATACTGATGCAGATACTCTCAGCCTACCATCGGACTGAG
CCCAGGGGACCCTTTTTTTAATAGTTAAAGGTAAGGACTGAAGGAACTGA
TGGATTTTTGCATCCCCCATAGTAATAATA

NTTTCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGTCAACCTAGGCTACATGG
TGAGACCTTGTCTTAACGCTCCTCTCTTTTGAGGGGATCATGGAGGGTGA
GGTGGCAATTGCTGGTAATCCCAGCACTTGGGAGGCTAAGGCAGGAGTTA
TCAGAAGTTCAAGGTTAGCCTGGGCTACATAACAAAACCCAGTCTTAAAA
CAAAGTTTTGGCCAGAGACAGGAGGGTCTGGGGAGTTTGAGGGCAGCCTG
GTCTTCGTAGGGAATACTAGGATAGTCATTGCTCCATAAAGAGATTATCT
GTAGTAGAAATGTTTATCAGTTAATTCATGTACTCAGCATTTGCTGAACA
TGTATACATTAAGAGACACTTTCCCATGGAGAGATGAGGACAGATAATAT
TTAGTACAAACAAGCTGAATCATTCCGAGAAGGAAAATAAAACTGGTGAA
ATGGCCAGGTTAGAAGCCAGGCCAGGAAAAATGAACATTAAAGTGTGGTG
TGGTGCACGCTCGTGATCCCAGCCCTGGAGAGGCAGAGGCAGGAGAATCA
GGAGTTTTGGGTTGGCCTTGGCTACCTGAAAGCCTGTCTTAAAAAAGACA
TTTAATCTTCTTTATTTTTTGGGGCATGAATTTATTTTTTCTGTTCTGGT
TCAAAACCGGTTTAAGGTTCAATATTCCCCCATGGCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_m16.b1 MSMg01no463_m16.b1 CHROMAT_FILE:
MSMg01no463_m16.b1 PHD_FILE: MSMg01no463_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:20 2005
         (174 letters)



>mm_chr7_26671951_26672524
          Length = 574

 Score =  284 bits (147), Expect = 2e-81
 Identities = 171/187 (91%), Gaps = 13/187 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgaggaaaagtaaataaacta-------------ctgttttgttggtggaaatgtggaa 47
           ||||||||||||||||||||||             |||||||||||||||||||| ||||
Sbjct: 409 gtgaggaaaagtaaataaactactgttgccctcccctgttttgttggtggaaatggggaa 350

                                                                       
Query: 48  gcacagagaggttgacaccttgcctcttagcccactatggtctagaagtcaggggtcaaa 107
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gcacagagaggttgacaccttgcctcttagcccactatggtctagaagtcaggggtcaaa 290

                                                                       
Query: 108 cccagtctgttgccaagagcctgaaaatgcagaatgtgagacaggcagacaaacctgata 167
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 289 cccagtctgttgccaagagcctgataatgcagaatgtgagacaggcagacaaacctcata 230

                  
Query: 168 atagaga 174
           |||||||
Sbjct: 229 atagaga 223


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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