BAC Information

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BAC

Clone NameMSMg01-464F10
Chromosome7 (Build37)
Map Location 66,071,105 - 66,071,337
singlet/doubletsinglet
Overlap geneAtp10a
Upstream geneGabrb3, EG668807, LOC434189
Downstream geneLOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a, LOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1, LOC664788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464F10.T7 (MSMg01no464_f10.b1)MSMg01-464F10.TJ (MSMg01no464_f10.g1)
ACCAG548778AG548779
length750769
length of high quality
(start - end)
188 (93 - 280)241 (76 - 316)
definitionCHROMAT_FILE: MSMg01no464_f10.b1 PHD_FILE: MSMg01no464_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:04 2005CHROMAT_FILE: MSMg01no464_f10.g1 PHD_FILE: MSMg01no464_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCACTTTTAATTTGCGGCCGCTAAAAGAANCACGATTCAAAAGGATCCGC
GGAANNCTTTGTTACATACTGTACCCCAANTTTAAAAAGGGNTCTTTGGT
TTTCTGGAGTCCAACTTCTTGAGTTCTTTTTATATATTGGATATTATCCC
TCTATTGGATGTAGGTTTGGTAAAGATCTTTTCCCAATCTGTTGGTTGCT
GCTATGTCTTGTAGACAGTGTCCTTTACCTTACAGAGCTTTGCAATTTTA
TGAAGTCCCACTTGTCAATTCCTGATCTTAGAGTATAAGCCGTTGGTGTT
CTGTTCAAGAAAATTTCCTCCTTGTGCATGTGTCTGAGGATGTTCTCCAC
TTTCTCTTTTATTATTTCAGTGTATTTGATTTTATGTGGAGGTCCTTTAT
CCACTTGGAATTGAGCTTTGTACATTATAATATTAATGGATCAATTTACA
TTCTTCTACTTGCTGATTACCAGGTGAACCATTCCCATTTGCTGAAAATG
CCTTTTTCTTTCCACTGTATGCTTTCAGCTCCTTTGCCTACTATTTATAT
GTGCGTTCACTCTTTTCTGTTACTTCCCATCATTTTCATTGTTTTTCCTG
CTTATCCCCGTTCCATTACATCCCATTTCCTTTTCCCTCTTGTTTCTCTT
TCACATTTTCGGTTTCCTGTTCCCCTCTCCCTTCCCCATTCCCCTTATTT
TTTGCCTCCCCTATCTTCTTTTTCCCTTTCTTCTCCTTTCTTTTTTTTCT

TCCCGATGATTTGGGTAGGNCTGGAGGNCGCCTGTTTCACAACATTAGGN
GACCTATAGAATGTCAGCAGAATTCAACCTGCTTGATGTAATAAGAAAAT
TGCTAAGGCAACTATGCGTTGGAGAGGTCCTGATGCCCAGAGTTGAGTCT
CTGCAACAGTGATGATGATGATGATGATGATGATGATGATGGCTTCTCTT
ATTGTGCCAGGCATCACATCAAGGACCTTTTCTATGTGTATCCTGACTTA
TTAGAGCCCACTGAATAAGATGATGGCTAAATGCTAGCCGATTACTGGGA
CAGCTTGATGTTATCGGTAACTCCGTATACTATGCCTAATTCTGATTGGT
TACCTCATTTTTTCCCAGCAAGATGCTCTTCTTCCCTTTCCCCAGTCTTT
TCCACAGAACTCAGTCCAGCAGGATACCAAGACGGTCAATTTGTCCATGT
GCTTCTGTGAATTTCAAAATCAATGATTCTTTCTGACTGTGTTATTTTCA
CGTGACCGTTTCCCATGATGTCAGCATGATCCAGGTGGTAGATGTATGTG
TTGTTTTCTCACGCTATTATTCCCCGCCTGCATTTCCCCTTTTTTTCTCT
CTCTTTTTCACCTCATCCCTTTTCCAACCTTTCCACTCCCTCCTTTTTTT
TTTCTTTTGTCTACGCCCTCCCATTTTTCGCCTCTCTCTTTTTCCTTTCC
ACTATCTTTCTTTTTTCCTCCCCCTCTTCCCCCCTTTTTCCGCAGTATTC
CTCCTTCTTCTCTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_f10.g1 MSMg01no464_f10.g1 CHROMAT_FILE:
MSMg01no464_f10.g1 PHD_FILE: MSMg01no464_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:04 2005
         (241 letters)



>mm_chr7_66070902_66071542
          Length = 641

 Score =  410 bits (212), Expect = e-119
 Identities = 229/236 (97%), Gaps = 3/236 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacctgcttgatgtaataagaaaattgctaaggcaactatgcgttggagaggtcctgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aacctgcttgatgtaataagaaaattgctaaggcaactatgcgttggagaggtcctgatg 263

                                                                       
Query: 61  cccagagttgagtctctgcaacagtgatgatgatgatgatgatgatgatgatgatggctt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 264 cccagagttgagtctctgcaacagtgatgatgatgatgatgatgatgatgatg---gctt 320

                                                                       
Query: 121 ctcttattgtgccaggcatcacatcaaggaccttttctatgtgtatcctgacttattaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||
Sbjct: 321 ctcttattgtgccaggcatcacatcaaggaccttttctatgtgtatcctgacagaataga 380

                                                                   
Query: 181 gcccactgaataagatgatggctaaatgctagccgattactgggacagcttgatgt 236
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 gcccactgaataagatgatggctaaatgctagctgattactgggacagcttgatgt 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)