BAC Information

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BAC

Clone NameMSMg01-465I01
Chromosome7 (Build37)
Map Location 32,100,855 - 32,101,043
singlet/doubletsinglet
Overlap genenone
Upstream geneAI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe
Downstream geneLOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233, LOC100043337, LOC546949, LOC100043836, EG626305, EG668342, EG626330, LOC100043340, LOC100043343, EG626358, LOC668351, EG384593, LOC100043351, LOC100043352, LOC100043353, EG384594, LOC100043838, EG668361, LOC668362, EG624584, LOC100043355, LOC546951, EG626740, EG668371, EG668377, LOC100043842, LOC634929
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465I01.T7 (MSMg01no465_i01.b1)MSMg01-465I01.TJ (MSMg01no465_i01.g1)
ACCAG549667AG549668
length738767
length of high quality
(start - end)		97 (374 - 470)192 (70 - 261)
definitionCHROMAT_FILE: MSMg01no465_i01.b1 PHD_FILE: MSMg01no465_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:38 2005CHROMAT_FILE: MSMg01no465_i01.g1 PHD_FILE: MSMg01no465_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATTTGCGGTCGCTAAANGAATCACTATTCCAAGAGGAGCCGCGGAATT
CTCACCTTACAAAAAAGAATGGCTAAGAAGCACCTGAAAAAATGTTCAGC
ATCCTTAATCATCAGCCAAATGCAAATCAAGACGACCCTGAAAGTCCACC
TCACATTAGTCAGGAATGGCTAAGATCAAAAATTCAGGAGACAGCAGATG
CTGACCAGGATGTGGAGAAAAAGGAACACTCCTCCATTGTTGGTGTGATT
TCAAGCTTTTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAA
TTGGACATAGTCCTATTTTTTTATCCCACAATACCTCTCCTGGGCATATA
TCCAGAAGACGCCCCAACTGGTAATAAGGACACATGCTCCACTATGTTCA
CAGCAGCCTTATTTATAATAGACAGAATCTGGAAAGAACCCAGATGTCCC
TCAACAGAGGAATGATACAGAAAATGTGGTACATTTATACAATGGAGTAC
TACTTTGCTATTAAAAACAATGAATTTATGAAATTCCTAGACTAGTGGAT
GGACCTGTAGGGTATCATCCTATGCGAGGTAACCCAATCACTAAAGAAAT
CTCATGATATGTACTCTCTGCCACGTGGATATTATCCCACAAATTTTATA
ATACTTTTTATATACACACCATTTGGTGAAACCCTGGTAATTTCTGACCC
TCTTTTTCAATTCATTAAACTCTTGTCCTTTATTGTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACAGAGATATGCCTGCCTCTACCTCCTGGTG
CTGGGACTAAGTGTGCTCACCAGCACTCCCTGACTGATTTTTTTTTTAAC
ATTGAAGCAATGAGAATATTGTATACAGGACACTGATCCTGGCAGATTTA
TTTGGGGGTCTGTAGCTTGAGTTAATATTTTTGTTTGGGTGGTGTATTTT
CATTATTGCTTTCAAAATGACTCTTAAAAAACACTTATATGCTTGCCCAG
CGTGTGATAGCTCTTTCTTTTACCGCACTTGTGTATATCAGGCACACCAG
CAATTACTGCTGACCCCTGCATGCTACCTACGCGCGACTGACTCAGTATT
TCTGCCCCTCTCAGTTCTGCTGAACTACCCCGTACGCAGTCACTCTGGGG
CTGCCTTACCTGGACCACTACTCTCATCGATTACCCAATATCTCCTATTC
CTAGGACGTCCATAGGTCTCCCATTGGCTCTATATGTCCTCCAGACATCT
CTGACGCCTCTCTACACCTACTCCTCCCCGATAAATTTAATACTGCTCTG
GACCCACCTTATCCTCATTCACCTTGTTCGCTACTGATTTTCCGCTGACC
GCCCTATGTGCTATTCACTAACTTCCTGTCGTCCCCCGCGCCACCCCCTT
CTCCTCCACTATTTCCTCTCTTCATATTTAGCCCCCCCCCCCACCCCTTT
TGGGTTTTCTGCTTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_i01.g1 MSMg01no465_i01.g1 CHROMAT_FILE:
MSMg01no465_i01.g1 PHD_FILE: MSMg01no465_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:38 2005
         (192 letters)



>mm_chr7_32100651_32101243
          Length = 593

 Score =  186 bits (96), Expect = 9e-52
 Identities = 167/192 (86%), Gaps = 6/192 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   gagatatgcctgcct--ctacctcctggtgctgggactaagtgtgctcaccagcactccc 61
           ||||||||| |||||  ||  ||||| |||||||||||||| ||| |||| |||||||||
Sbjct: 205 gagatatgcttgcctccct--ctcctagtgctgggactaagggtgttcactagcactccc 262

                                                                       
Query: 62  tgactgattttttttttaacattgaagcaatgagaatattgtatacaggacactgatcct 121
           |||||||  ||||||| ||| |||  || |||| ||||||||||||||||||||||||||
Sbjct: 263 tgactga-atttttttaaactttggcgccatgacaatattgtatacaggacactgatcct 321

                                                                       
Query: 122 ggcagatttatttggggg-tctgtagcttgagttaatatttttgtttgggtggtgtattt 180
           |||||||| | ||||||| ||||||||||||||||| |||||||||||  |||| | |||
Sbjct: 322 ggcagattcacttggggggtctgtagcttgagttaacatttttgtttgcctggtatgttt 381

                       
Query: 181 tcattattgctt 192
           ||||||||||||
Sbjct: 382 tcattattgctt 393


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 593
Length adjustment: 8
Effective length of query: 184
Effective length of database: 585
Effective search space:   107640
Effective search space used:   107640
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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