BAC Information

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BAC

Clone NameMSMg01-465M19
Chromosome7 (Build37)
Map Location 113,758,608 - 113,758,854
singlet/doubletsinglet
Overlap geneGm1966
Upstream geneTrim3, Arfip2, Fxc1, Dnhd1, LOC100042811, LOC672646, 1500003O22Rik, Ilk, Taf10, Tpp1, Dchs1, Mrpl17, 9130208D14Rik, LOC626055, LOC100042856, LOC100042047, EG668108, EG668117, Gvin1, LOC672660, LOC100042097, LOC668128, LOC634394, EG209380, EG668139
Downstream geneLOC100042141, Olfr693, Olfr694, Olfr695, Olfr696-ps1, Olfr697, Olfr698, Olfr699, Olfr700, Olfr701, Olfr702, Olfr703, Olfr704, Olfr705, Olfr706, Olfr707, Olfr708, Olfr709-ps1, Olfr710, LOC384651, Olfr6, Olfr711, GA_x5J8B7W6B6J-1784824-1783474, Olfr2, Olfr713, Olfr714, Olfr17, Olfr715, Olfr716, Nlrp14, LOC100042278, 1700012H05Rik, Syt9, Olfml1, Ppfibp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465M19.T7 (MSMg01no465_m19.b1)MSMg01-465M19.TJ (MSMg01no465_m19.g1)
ACCAG549895AG549896
length806784
length of high quality
(start - end)
249 (60 - 308)417 (62 - 478)
definitionCHROMAT_FILE: MSMg01no465_m19.b1 PHD_FILE: MSMg01no465_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:02 2005CHROMAT_FILE: MSMg01no465_m19.g1 PHD_FILE: MSMg01no465_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAATTCTTGGG
TTTCCCTGTTGGTTAGACAGCCACTGTTGAACTAGCTGGATCATAACCTG
TAGGCCATTTTAATGAATCCACCTGAACCATCTTCTAAACCATGAACCTT
ATAAGGTCTCAGGTTCAGAGTTCAAGAAGGACAATAAGTAGGACTGTCCC
TTTGATTAAGTTATTGATTGGAAAACTTATGATATGGGAAATTTGGAGGT
ATTTTTGAGTTAGACAGAACTAAGAAATAGAATTTCTCTGGGATTAGCTG
GGGAAGGTTTGTTGTTCTCCTGGAAAACATTATAGCCATCAGAGCCACCC
TGACACAATTGCTTTTCCGCTCTTGAATTCAAATAATGATATTTATGGAT
AGCCCACCCCGAGTTTTAGAGAGGAATATTTTGAGAGTGATGTCCTGTAT
TTACCGCTTATATTTTGGTGGTTTTTCTTGAGCTTTTGACTTTGCCGCCC
AGTTTTGCTAACTTTTGTACTTTCCTTTGTTTTTCCTTCTTTCCCTATTT
CTCTCCTTTCTTATCTCTTATAACCTCTGTCCGCCCCCCCCCACATATAC
CTCTCTATTTGTCTTTCTTCTTCATACTTTATTCCCTTATTATTTATTTA
TATTTCAATATCTCTGTGACTCTCTACTTCACGGGTATATTTATTAGATC
AATATCCTCTAACCCTTCCTACCGCTCTCCCCTTTTTTAAATACCTTCTC
TATAGCTCTCTCTCTCCTTCCCACTCTATTCTTACTCCACTCGTCCACTT
TTTCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATT
TGATTTTCTGGAGTCTACCTTCTTGAGTTCTTTATATATATATCTTGATC
ATGTCTTCCTCTCCTTCCACTCTTCCCAATACCTTCCCTTCACCTCACTT
CCCTGCTATAATCAAATCCTACCTTTCTTCTCAGAAATGGCTCACAATAA
GAGAAGACTCCCATAGATATCAACCCACCTTGGTATATTGTCCCGTCCAG
CAGAACTTAGTTATTCCGTGGGTCGAGAAGGACCAGGGCCTGAAAGCGAA
ATGAGCGGAGAAAGGGAAGCAAGACCAAGCAAAGAGTTGTCAAGGTCTGT
TTAATGAGGCAAAGAGCCAGGTTATAAGCACATAATGAGAGAAAATTCGG
GAGGGGTTGAGGGGGTATAATAAAACACAGTGAAAGGGATGGACATCTGG
GGCGGATGCTGATTACAGGCTTCTTGCCACTTATCTTGGAAGGTTGGCCC
TAAAACTGTACCAAGGGGCCTTCCAAAATTTTGCAGATTATTTTGGAGGG
GCGGCCCTGACTATCAAGTCCCTGTAGTCTTTTCAAACTTTTTTTCTTTT
TTGGAGTGCCCTTAATTTCTCTCCTTTCTCTCTTTAACTCGTTACCACAC
AGTGTATCTTTCTTCTCCTAAACTCTTCTTTGTCTTTTTAATCCACCCCC
ACCTCTCTACCCTTTTTTACCTTACTTATTCGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_m19.b1 MSMg01no465_m19.b1 CHROMAT_FILE:
MSMg01no465_m19.b1 PHD_FILE: MSMg01no465_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:02 2005
         (249 letters)



>mm_chr7_113758408_113759056
          Length = 649

 Score =  408 bits (211), Expect = e-118
 Identities = 238/247 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggttagacagccactgttgaactagctggatcataacctgtaggccattttaatgaatc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 201 tggttagacagccactgttgaactagctggatcataacctgtaggccattctaataaatc 260

                                                                       
Query: 61  cacctgaaccatcttctaaaccatgaaccttataaggtctcaggttcagagttcaagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacctgaaccatcttctaaaccatgaaccttataaggtctcaggttcagagttcaagaag 320

                                                                       
Query: 121 gacaataagtaggactgtccctttgattaagttattgattggaaaacttatgatatggga 180
           ||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||  ||
Sbjct: 321 gacaataggtaggactgtccctttgattaagatattgactggaaaacttatgatatcaga 380

                                                                       
Query: 181 aatttggaggtatttttgagttagacagaactaagaaatagaatttctctgggattagct 240
           ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 aatttgggggtatttttgagttagagagaactaagaaatagaatttctctgggattagct 440

                  
Query: 241 ggggaag 247
           |||||||
Sbjct: 441 ggggaag 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)