Query= MSMg01no465_n02.b1 MSMg01no465_n02.b1 CHROMAT_FILE:
MSMg01no465_n02.b1 PHD_FILE: MSMg01no465_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:04 2005
(311 letters)
>mm_chr7_97939222_97939931
Length = 710
Score = 561 bits (290), Expect = e-164
Identities = 304/310 (98%), Gaps = 4/310 (1%)
Strand = Plus / Plus
Query: 5 gaattcctgttttcctatagattcctatcttccacactagtctttcatctcgaaaatgct 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgtttt-ttatagattcctatcttccacactagtctttcatctcgaaaatgct 263
Query: 65 gaaagtttacagtgtgtggtggtttgcaacattctgaaattatagggagtgtcataactt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaagtttacagtgtgtggtggtttgcaacattctgaaattatagggagtgtcataactt 323
Query: 125 aaatttcattgaaaaaagatgaccctcggttctaaaaatatgaaaagggtttgtttttta 184
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agatttcattgaaaaaagatgaccctcggttctaaaaatatgaaaagggtttgtttttta 383
Query: 185 ttttttattttttttgaaaactaagctctgttattacttatttacctgttttgggtatgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttttttattttttttgaaaactaagctctgttattacttatttacctgttttgggtatgt 443
Query: 245 gactccttctt---tggcctttaagcaagactagtatgttggtaataccttttgctacat 301
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gactccttcttctttggcctttaagcaagactagtatgttggtaataccttttgctacat 503
Query: 302 ggcctttaga 311
||||||||||
Sbjct: 504 ggcctttaga 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 710
Length adjustment: 9
Effective length of query: 302
Effective length of database: 701
Effective search space: 211702
Effective search space used: 211702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no465_n02.g1 MSMg01no465_n02.g1 CHROMAT_FILE:
MSMg01no465_n02.g1 PHD_FILE: MSMg01no465_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:04 2005
(495 letters)
>mm_chr7_98146585_98147479
Length = 895
Score = 702 bits (363), Expect = 0.0
Identities = 375/381 (98%), Gaps = 4/381 (1%)
Strand = Plus / Minus
Query: 115 tatttgcatttacaggattattaagaatagggaacgcttttaaaaacatgttatttattc 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 tatttgcatttacaggattattaagaatagggaacgcttttaaaaacatgttatttattc 836
Query: 175 ataatccttcatttttttttttagaaacctctgtttatttcacctttctattgagaactt 234
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 ataatcc----tttatttttttagaaacctctgtttatttcacctttctattgagaactt 780
Query: 235 tgttttcttggagcttagttgccttttttgtttgttgttctttccttagctttttcatat 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 tgttttcttggagcttagttgccttttttgtttgttgttctttccttagctttttcatat 720
Query: 295 attataaacactagtcttctgtcacaggacttgcagaaatcaaactggaagttcttccat 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 attataaacactagtcttctgtcacaggacttgcagaaatcaaactggaagttcttccat 660
Query: 355 actagatagctttcctcttatcagaaatggagaagagtaatcaattattatagtattatc 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 actagatagctttcctcttatcagaaatggagaagagtaatcaattattatagtattatc 600
Query: 415 cagctataggctgtacaaactataataatgagtgacctggaacgatacattcatgagtct 474
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 cagctatacgctgtacaaactataataatgagtgacctggaacgatacattcatgagtct 540
Query: 475 ctgtgtatacacttgcttact 495
|||||||||||||||||||||
Sbjct: 539 ctgtgtatacacttgcttact 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
