BAC Information

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BAC

Clone NameMSMg01-466A19
Chromosome7 (Build37)
Map Location 50,005,790 - 50,006,268
singlet/doubletsinglet
Overlap geneEG546965
Upstream geneEG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179
Downstream geneLOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466A19.T7 (MSMg01no466_a19.b1)MSMg01-466A19.TJ (MSMg01no466_a19.g1)
ACCAG550086AG550087
length565757
length of high quality
(start - end)		---483 (78 - 560)
definitionCHROMAT_FILE: MSMg01no466_a19.b1 PHD_FILE: MSMg01no466_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:23 2005CHROMAT_FILE: MSMg01no466_a19.g1 PHD_FILE: MSMg01no466_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:23 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CAAAATTCNCCCANNCATCCATTCAAAAANNGGNAANNNATTCCAAAAAA
AAAACCNCAGGAANCAAAAANCCGAACAAAAGAACTCGGAAAACAAATCC
TAACAAAGTGAAAAAAAAACAAAAAAAAAAAATAAAAGTAGTGATGCTAA
GGGGAATGGAGGGCGAAAGAATGGGAGCAGCTGGGGTTTTTTTGAAGTCT
GATGATATCAACAAAAAANGAAAAAAGTTTTTAAAACACCGTTAAAAAAA
AACCCAAAAATAAAANTTCCAAAAACCCCACCTATTCAAAAAAAAAAAAA
AAACCAAAATTTAAAAAAAAAATTTAAAAAAAACCCCCCCTAAAAAAAAA
AAATTTTAAAAAAACTCTCNNAAAACCTCCAAAAAAACCAAAAAAAAAAA
CCCCCCCCACAANNAACCCAAAAAAAAATAATAACCCCCAAACCCCAACA
AAAAAAAAACACATTCACTAAAAAAAAAAAAAAAAAAAAAACAAACTTTT
TTAACCAAAAAAAAAAACAAAAAACAAACAAAAAAAAAAAAAAACAAAAA
AAAAAAAAAAAAAAA

NNCCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTACCTTTGGAAAAGTAGTCAA
TGCTCTTACCCGCTGAGCCATCTCACCAGCTCGAATCTCCACAGTCAATG
AAGTAAGTATTTTGGGGAGAACTTAAGACACCCACAGCTGTTGACCCATT
TCTATCTGTACCATGTTTCTTCTCTGACATAACTCTCATGTGTCCATCAA
TCTACAGAAAAACCATTCTTTCCTTTTTCTACAGAAGGTGCTTCTGCACA
CCCTCTAAAATCCTGGTTCTTGGTGATGTGATCTAACAAGTGCTCACACC
AGTATTTGGCAACCTGAAAACCAGAATGCTCAACATATACAGAAAAACTA
AAAAGACTATGTCTCAAATCCACTTGGCAAATGGATCACAGCTGTATGTG
CATCCTCCATTTCAACTCGCCAACCTTGCATGCTGCTTAGGCCATATCGA
AACCCATCCCCCCTGCCCCTGGGCATTATGCTTTTCCATCATTGGCTTGT
CTAAAAATGCTCCCATTATGACTTGATCCTCTAGGTCCAGAGCAGCCCGG
GGGTGGTGTGGATGAATCCTGAAGCGTAATGGCCGAAGAATTTATAATCC
TCCCTCGCCTTCGCTACTCCTTTTTTCTACACTCTTCCCCTTTTCTCTTT
CTCCTTCCTTAAGTCTAAATTTCTCCTCTTCTTCTCTCCTCTTTCTCTTT
TTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_a19.g1 MSMg01no466_a19.g1 CHROMAT_FILE:
MSMg01no466_a19.g1 PHD_FILE: MSMg01no466_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:23 2005
         (483 letters)



>mm_chr7_50005532_50006413
          Length = 882

 Score =  774 bits (400), Expect = 0.0
 Identities = 460/480 (95%), Gaps = 1/480 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   acctttggaaaagtagtcaatgctcttacccgctgagccatctcaccagctcgaatctcc 63
           ||||| |||| || ||||| ||||||||||||||||| |||||||||||| ||| |||||
Sbjct: 737 accttcggaagagcagtcagtgctcttacccgctgagtcatctcaccagcccgagtctcc 678

                                                                       
Query: 64  acagtcaatgaagtaagtattttggggagaacttaagacacccacagctgttgacccatt 123
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 677 acagttaatgaagtaagtattttggggagaacttaagacacccacagctgttgactcatt 618

                                                                       
Query: 124 tctatctgtaccatgtttcttctctgacataactctcatgtgtccatcaatctacagaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 617 tctatctgtaccatgtttcttctctgacataactctcatgtgtccatcaatctccagaaa 558

                                                                       
Query: 184 aaccattctttcctttttctacagaaggtgcttctgcacaccctctaaaatcctggttct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaccattctttcctttttctacagaaggtgcttctgcacaccctctaaaatcctggttct 498

                                                                       
Query: 244 tggtgatgtgatctaacaagtgctcacaccagtatttggcaacctgaaaaccagaatgct 303
           |||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||
Sbjct: 497 tggtgatgtgatctaacaagtgctcacagcagtatttggcaacctgagaaccagcatgct 438

                                                                       
Query: 304 caacatatacagaaaaactaaaaagactatgtctcaaatccacttggcaaatggatcaca 363
           || |||||||||||||| ||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct: 437 catcatatacagaaaaaataagaaggctatgtctcaaatccacttggcaaacggatcaca 378

                                                                       
Query: 364 gctgtatgtgcatcctccatttcaactcgccaaccttgcatgctgcttaggccatatcga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 377 gctgtatgtgcatcctccatttcaactcgccaaccttgcatgctgcttaggccatatcgc 318

                                                                       
Query: 424 aacccatcccccctgcccctgggcattatgcttttccatcattggcttgtctaaaaatgc 483
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aacccatccccc-tgcccctgggcattatgcttttccatcattggcttgtctaaaaatgc 259


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 882
Length adjustment: 10
Effective length of query: 473
Effective length of database: 872
Effective search space:   412456
Effective search space used:   412456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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