BAC Information

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BAC

Clone NameMSMg01-466B14
Chromosome7 (Build37)
Map Location 58,284,874 - 58,285,103
singlet/doubletsinglet
Overlap genenone
Upstream geneNell1, 4933405O20Rik, EG668766, EG668767, EG668768, EG638046, EG668770, EG668774
Downstream geneLOC668776, LOC434186, LOC546971, LOC668779, Tmem16e, Slc17a6, EG620599, LOC654473, LOC100040608, Gas2, 1700015G11Rik, EG668783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466B14.T7 (MSMg01no466_b14.b1)MSMg01-466B14.TJ (MSMg01no466_b14.g1)
ACCAG550124AG550125
length7451,220
length of high quality
(start - end)
231 (85 - 315)---
definitionCHROMAT_FILE: MSMg01no466_b14.b1 PHD_FILE: MSMg01no466_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:27 2005CHROMAT_FILE: MSMg01no466_b14.g1 PHD_FILE: MSMg01no466_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATCAAATATTTTGTGGCGCNAAACGAANCACTAATTCCCAAACACCGC
GGAATTCAGGCTTTCTCCTCAATTAGNTTAGNCAAGACAATTCTGTATAG
ACAAGCCCATGGGTTAACCTGATTTAGACACTAGTTCAGTGGCAGAGTCT
TCCAAGGAGATTCACTATTATGTCAAGTTTGTAAATAAAACCACCATTCC
CCAGTAATATTTGGTAAAGCAGTGAGATAGTTGGACCTAAAGCTACCTGA
TGTTCTTACCCTTTATTCTTTGCTGTGGAACTCCCATCTAGAACAGAGCC
CCCTTGCCTCCTTTTTTTTTAAACTGTCATTGGTAAGATAATTACTACAA
AGCAGGGGAACAACTTAACATTAGCTGATTGTGGTTGTGCATATTTGAAA
CATTAGCTGGTTGTTGTTGGAGGCAAGAAGACTAAAGGTAAAGCTAGCTA
TATGAGATGCTGTCTCAAAAGACAAAGAAAAAAACAGGGGAAGGTCAAAA
GCAAAGGGTCATATTAGTTTCCCTGTCTCCGAGTCTTGGCCATAACTGAG
CTCTTGAGACTTGGTTTACCATCAATATGCCATGCCACATGCCGTAAACA
GATACAAATAATTATTATTAATAATATTCCCTTTGCTATACTAAAGGGAT
CCCACATGACTTCCTCCGTAGCCTTCCTATTTCATCAGTAAATTTTCACT
GAGAACTTTTAACATTTGTGCTGATCTCGGTCTCTTTTCCTGTCC
AGCACGCAGCGCATAAGCGGCCCTAGCGCCTGGGCCTGGTCTTGCNCTGT
TTTTCCACCTACATGTGGAGGTGGGGACAGCTTATACAGTAATTGTATCC
CGCCGCGAACNGCCCCTATTGTCAACATCGCGATTGTTATTCCTGAGCAA
TAACCATCTCCTGCAGGTGAAGGTCCAACGCTCAATTAGAACCAATACAG
TAACAGCGACTTTGTGGTGACCGTAGCCTTCAGCTCGTAGTACCGTCGCG
AGGATCTAGGCCCCCAAGGAAGTTTCTGTGATACTTCTCTGACAGATGAT
CTACTTTCACCAAGTACACACCATTGTAACTTCTTCTAAGCAATCTATAC
TTACCGGTGTCCTCCACATCTTCCTCACTCCTGGTCGCCCACCCTCGGAC
TATGCCATTACGCAATTATATCAAATACTGCCTTCTACATGAGGTGTATG
CATCAACCTACCCTAAGGCACACCGCTTCTGTTCTTGATATCTTCCCCCT
CTACACCTCTTGCATATCTACTACGTAATTAGCACCCGCATATGTTTTAT
CTTGCCTTCTCTGTTTCTTGGCTGTGAATCTATTAACCGGCTCTCTTATA
CTCATCACCTTACAGCCCACCCGACCGTTAAGACGCCGGATCCCGCCCAC
ACCAGGTCGCACGACTTAATTTATGTCGCTCTCCCTCCTACCTCTCTCCC
TTCTCTCTATATGTCTTCTCCCGACTCACCAGTATCCTCTCCTCTCTGCT
TATCGCTCTTCCTTGCTGCTTCGCCCGCTCTTGTGACCTCTCCTAATCAC
ACACATGCGACATATGAATTCCTGCGATATATCTCTTTTTCATGCCCACG
CTCCACTATTTCACCTTACATCCCGACGACGTACTACCNTCGTCTCTACT
ACGTCTATAACGGCCGCTAGATTACTCTACTCCCTATTTCAATCTATGGT
CTCTTATTTTATGCTTCTTGTTGGTCTCTATCGGCTCTCCCGCCGTCTCT
GGTCATTTCCTCATGATCTCTCGCCATGCTCATATATAGTATGTACTAAT
TACACATTATACAAGACTCTCTCGTTTACAGTCGCTCACATATTCGTTCT
GCGCTCTCTCTCTCCGCTCATATTACACTACCTGCACGACTCTCGCTCTA
GTTGATGATATCTATTATAATATATCTCACTCTATTCTGCTAAGACTATT
CTCCACTTACATATATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_b14.b1 MSMg01no466_b14.b1 CHROMAT_FILE:
MSMg01no466_b14.b1 PHD_FILE: MSMg01no466_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:27 2005
         (231 letters)



>mm_chr7_58284674_58285304
          Length = 631

 Score =  383 bits (198), Expect = e-111
 Identities = 222/230 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacaattctgtatagacaagcccatgggttaacctgatttagacactagttcagtggca 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacaattctgtacagacaagcccatgggttaacctgatttagacactagttcagtggca 260

                                                                       
Query: 61  gagtcttccaaggagattcactattatgtcaagtttgtaaataaaaccaccattccccag 120
           |||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||
Sbjct: 261 gagtcttccaaggagattcactattatgtcaaatttgtaaataaaaccaatattccccag 320

                                                                       
Query: 121 taatatttggtaaagcagtgagatagttggacctaaagctacctgatgttcttacccttt 180
           ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 taatatttggtaaagcagtaagatatttggacctaaagctacctgatgttcttacccttt 380

                                                             
Query: 181 attctttgctgtggaactcccatctagaacagagcccccttgcctccttt 230
           ||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 attctgtgctgtggaactcccatctagaacaaagcccccttgcctccttt 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)