BAC Information

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BAC

Clone NameMSMg01-466B24
Chromosome7 (Build37)
Map Location 36,374,301 - 36,374,417
singlet/doubletsinglet
Overlap geneAnkrd27
Upstream geneKctd15, Chst8, Pepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp
Downstream genePdcd5, Dpy19l3, zfp507, LOC100043872, EG668988, LOC668507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466B24.T7 (MSMg01no466_b24.b1)MSMg01-466B24.TJ (MSMg01no466_b24.g1)
ACCAG550144AG550145
length751772
length of high quality
(start - end)
116 (77 - 192)387 (84 - 470)
definitionCHROMAT_FILE: MSMg01no466_b24.b1 PHD_FILE: MSMg01no466_b24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:30 2005CHROMAT_FILE: MSMg01no466_b24.g1 PHD_FILE: MSMg01no466_b24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCCTCCTCATTATTTGCGGTTGCTATATGACTCACTATTTTCCGAGGA
TCCGCGTGATTCAATTACTTTCCCATTCTCATGATTCCCCAAGAGAAGCA
GAGAATGCAATTTGGGGGGGACAGAGTCAGAAGGGAATAGCATTCTTCTG
GTTTCCCATAGGTGGTTCCATGGGGCAGAGTATGACAGCTGATGATGCTT
CGGATAAAAACCACTTGAGAAACAGGATGTATGTGATGGCGAGATAAACC
TGGGGAAGGTCACGTGACACTGGCAAAGCACTCAAAACCATCACTCCTCA
GCAAGGAGATATGGTCAGAAAGGATTAGGCCTAGCAGGGGATGGGGGAGA
CACTGAGATGTGGACCAAAGCAAGGCTAAGGATTCGGTAGGTCGTGAGTT
CAGTTCATAAGAAGTCTTATGAATCCAAGACCATGGGGCTCCTGACCATC
CCTAACAGACCTCCAGTGAGAATTGACAGCACTAGTCTTAACTGCCTAAT
ACCCCTGAACGTGAGTTACTCTGTGAACTAGACTGCCCTACGGATGAATG
TCTGAATATTTCAGGAGATAGCATGTCCTTCGATGTGTGGTTTTCGCTGC
CCCTTTCTTTTTTTTGTCTTTTTCCTATTACTTTTGATTACACTATTTCC
GCATCTTTGTTCCTTGTTTCTAATTCCTGCTTTTTTTTAATTTTACTTTT
TGTTCCTTTATTTTCTCTCCCTTTTTTTTCTCTCTCTTTGTTTTCCCCCT
G
TTTTTCTTCGAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCTGACTCTTAAGG
CAAATAACAGACCAAGAGAGAGACTGAGCTTTTAAGACCACATCTGGTTA
CATACCTTCTAATCCTTTCCAAATCGTTCATCAACTGGGGACTAACCATG
CAAATATATGAGCCTGTGGAGGCCATTTTCATTCAAAGCATCTCATACAG
CTATGCGAGTCTGTACGTGGGTTCATGCATAGGTGTGCAGTGCCCACAGA
AGGGGTGGCGCATGGCCTAGAACTGGAGTACAAGCAGTTGTGAGCAGTTG
TGAACTGCTTGACATGAGAACTGGTTTCTTCTGCACCAGTAGTATACACT
CGACCACTGTGCCATCTCTCCAGCCCCAACTATTTATTATTATTATTTTG
AGACAGAGTTTCTCTGCATAACAATCCTGGTCATCCTGTAACTCACTCTA
TATAACAGGTTGGCCTTCAACTCAGAGCTATGCCTGCCTCTGCCTTCCTG
ATGTTTTTATTAAAGTATGTTTTCACCATTCCTCCCCACTTAATTCTCAT
TTTTCTCAGCTTGGTCTCTTGTTAATTACTTACCCATTCACCTTTCTATT
TGTTATTTTTTTACTCCTAATCCCCTCTATCCTATTTATCTCCCCGCCCC
CCCTTAATTATTTCTCCATCTCCTCTCCTATTTCTATATTATACCTCCTA
TCTCTACATTTTAATTGATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_b24.b1 MSMg01no466_b24.b1 CHROMAT_FILE:
MSMg01no466_b24.b1 PHD_FILE: MSMg01no466_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:30 2005
         (116 letters)



>mm_chr7_36374101_36374617
          Length = 517

 Score =  219 bits (113), Expect = 6e-62
 Identities = 116/117 (99%), Gaps = 1/117 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcatgattccccaagagaagcagagaatgcaattt-gggggggacagagtcagaaggg 59
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 317 tctcatgattccccaagagaagcagagaatgcaatttggggggggacagagtcagaaggg 258

                                                                    
Query: 60  aatagcattcttctggtttcccataggtggttccatggggcagagtatgacagctga 116
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aatagcattcttctggtttcccataggtggttccatggggcagagtatgacagctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 517
Length adjustment: 8
Effective length of query: 108
Effective length of database: 509
Effective search space:    54972
Effective search space used:    54972
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)