BAC Information

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BAC

Clone NameMSMg01-466C12
Chromosome7 (Build37)
Map Location 141,444,562 - 141,444,919
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668747, 4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1, Adam12, A130023I24Rik
Downstream gene4933400E14Rik, LOC100043248, LOC100043699, LOC668750, Dock1, B830028B13Rik, EG668693, LOC100043254
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466C12.T7 (MSMg01no466_c12.b1)MSMg01-466C12.TJ (MSMg01no466_c12.g1)
ACCAG550168AG550169
length748744
length of high quality
(start - end)
515 (51 - 565)416 (83 - 498)
definitionCHROMAT_FILE: MSMg01no466_c12.b1 PHD_FILE: MSMg01no466_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:32 2005CHROMAT_FILE: MSMg01no466_c12.g1 PHD_FILE: MSMg01no466_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGATCTGTTCATGTAAAAATGAAAATAGCTTGTTGTGCCC
TGAAGCTCTCCAGTTACCAAAATGCTTAAGATACATTTTGTTGCCAGGGC
AATAGTGGACAAACACATCAAACTACTAACCACTGAGCCATCTCTCTAGC
CCCAAAGCCCTACATCAGATGATTCACACCAGCCTATAACTCCAGCTCCA
GGGGATCTGACACCTTCTTCTGGCTTCTGAGAATACCAGCACATATGTGG
TGTACATAAACTGATGCAAGCACACACATACACATAAATAAAAATAATAC
AGCTTTAAAAAAAAAAGAGGTAGAGCCTTTAGAAGACAATGAAACCTTGG
GGTTCTCATGAATAGGATCAATGGCCTGATGGAAGAGGTCAGAGGAAGCT
GTTAATTTTCCCATCACAGGATAGCAGCAGGGGGCAGCATCTTTGAAGCA
GGTAGCAAAACATCCCCAGACACCTGATCTGCAGGGGCCTTGAAGAACTT
CCCAGACTCTGAAATGTGATAAATTCTTCTTATAAATTACCTCATTGAAA
CTCTTCTTAACAGGAAGAGTGGGGCAATAGACACACTGCTAAATATCAAA
GGGCATTGTAAACAAATAAGAAAGTAAATGAAAAATGGAACAAATATTTA
AACTATATGACCCAGGGGGGGTTTATTGGCAAGGGTTTCAAAAGAAAA
NNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAAGATCTGATTTTCT
ATACCTCAAGTTCCTGCCTCCATGCCTTCCTGCATGATGTTCCCTTGGGG
CCATGAGCTGAATAAGTCCCTCCTCCTTCAAGTTGTTTCTGCCAGGTATT
CTGTCATAGTGTCAACTAGAGTCACTAGTGTACTTGGTAGATCTCATTTC
AGGGGTATACCTGCTCCATTAACCAGAGAACAGCAGCTCTTTAAAACACA
GGCTGACTGGAGAGATGGCTCAGTAGTTAAAAGAAGAAGGTCCAAGTTCT
ATTGCCAGCACCCACATTGGGCAGCTCACATAAGGGGACCAGACACCCTC
TTCTGGCCTCTGAGGGAACCTGTACTCATATGTATGTCCCCTGAATGTTC
CTACATGAAGACACAGATTCAGGTACTAAGGTGTGTGNGTGTGTGNGNGN
GNGNNNNNTTTNTTNNTTTTTTTTGTTTNNTTTTTTNTGTTTNNGTNNTG
TTTTTTTTTGTTTTTGTGTGTTTGTTTGGTTTTGTTTTTTTTTTTTTTTT
TGGTTTTTTTTTTTTTGTTTTGTGTTGGTTGTTTTTTTTTTGTTTTGTTT
TTTTTTTGGTTNTTTGGTTTTTTTTGTTGGTTTGGTTGGTTGGTTGGTTT
TGTTTGTTTTTTTTTTTTTTTTTTTTTTTGTGTGTTTTGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_c12.b1 MSMg01no466_c12.b1 CHROMAT_FILE:
MSMg01no466_c12.b1 PHD_FILE: MSMg01no466_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:32 2005
         (515 letters)



>mm_chr7_141444562_141445476
          Length = 915

 Score =  671 bits (347), Expect = 0.0
 Identities = 356/359 (99%), Gaps = 2/359 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagatctg-ttcatgtaaaaatgaaaatagcttgttgtgccctgaagctctccag 63
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gaattcagatctgatt-atgtaaaaatgaaaatagcttgttgtgccctgaagctctccag 300

                                                                       
Query: 64  ttaccaaaatgcttaagatacattttgttgccagggcaatagtggacaaacacatcaaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ttaccaaaatgcttaagatacattttgttgccagggcaatagtggacaaacacatcaaac 240

                                                                       
Query: 124 tactaaccactgagccatctctctagccccaaagccctacatcagatgattcacaccagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tactaaccactgagccatctctctagccccaaagccctacatcagatgattcacaccagc 180

                                                                       
Query: 184 ctataactccagctccaggggatctgacaccttcttctggcttctgagaataccagcaca 243
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 179 ctataactccagctccaggggatctgacaccctcttctggcttctgagaataccagcaca 120

                                                                       
Query: 244 tatgtggtgtacataaactgatgcaagcacacacatacacataaataaaaataatacagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tatgtggtgtacataaactgatgcaagcacacacatacacataaataaaaataatacagc 60

                                                                      
Query: 304 tttaaaaaaaaaagaggtagagcctttagaagacaatgaaaccttggggttctcatgaa 362
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  tttaaaaaaaaaagaggtagagcctttagaagacaatgaaaccttggggttctcatgaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)